PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26001-26050 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | * | 99.1433 | 99.2014 | 99.0854 | 69.5094 | 44965 | 362 | 44959 | 415 | 15 | 3.6145 | |
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | het | 98.7746 | 98.9539 | 98.5959 | 72.5206 | 28095 | 297 | 28089 | 400 | 4 | 1.0000 | |
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | homalt | 99.7690 | 99.6273 | 99.9110 | 62.5841 | 16842 | 63 | 16842 | 15 | 11 | 73.3333 | |
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | * | 99.1157 | 99.1614 | 99.0701 | 69.2148 | 29089 | 246 | 29085 | 273 | 11 | 4.0293 | |
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | het | 98.7264 | 98.8941 | 98.5593 | 72.2989 | 18064 | 202 | 18060 | 264 | 3 | 1.1364 | |
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 24 | 0 | 24 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | homalt | 99.7597 | 99.6016 | 99.9183 | 62.2389 | 11001 | 44 | 11001 | 9 | 8 | 88.8889 | |
| rpoplin-dv42 | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 88.8889 | 83.0189 | 95.6522 | 88.3838 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | het | 88.8889 | 80.0000 | 100.0000 | 88.6792 | 24 | 6 | 24 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 78.7879 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 90.0662 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | * | 98.0229 | 97.5795 | 98.4704 | 98.6389 | 2056 | 51 | 2060 | 32 | 13 | 40.6250 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | het | 97.5874 | 96.8539 | 98.3321 | 86.1464 | 1293 | 42 | 1297 | 22 | 7 | 31.8182 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | hetalt | 95.1220 | 97.5000 | 92.8571 | 93.4783 | 39 | 1 | 39 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | homalt | 98.9747 | 98.9071 | 99.0424 | 85.2054 | 724 | 8 | 724 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | * | 99.1686 | 98.5527 | 99.7922 | 67.5463 | 44671 | 656 | 44671 | 93 | 49 | 52.6882 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | het | 98.8381 | 97.9748 | 99.7168 | 68.7996 | 27817 | 575 | 27817 | 79 | 36 | 45.5696 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 79.1667 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | homalt | 99.7333 | 99.5504 | 99.9169 | 65.2026 | 16829 | 76 | 16829 | 14 | 13 | 92.8571 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | homalt | 97.0588 | 97.0588 | 97.0588 | 88.0282 | 33 | 1 | 33 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | * | 78.5714 | 73.3333 | 84.6154 | 89.9225 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | het | 77.7778 | 77.7778 | 77.7778 | 90.0000 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.1538 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | * | 97.8802 | 97.6103 | 98.1516 | 85.0201 | 1062 | 26 | 1062 | 20 | 8 | 40.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | het | 97.5138 | 97.2452 | 97.7839 | 84.6774 | 706 | 20 | 706 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 86.9565 | 76.9231 | 100.0000 | 96.0784 | 10 | 3 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.9986 | 99.1404 | 98.8571 | 84.4858 | 346 | 3 | 346 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | * | 91.9424 | 91.4530 | 92.4370 | 89.1225 | 107 | 10 | 110 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 93.1730 | 96.8750 | 89.7436 | 89.4452 | 62 | 2 | 70 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 77.4194 | 63.1579 | 100.0000 | 90.1408 | 12 | 7 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | * | 95.1456 | 92.4528 | 98.0000 | 89.3617 | 49 | 4 | 49 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | het | 93.1034 | 90.0000 | 96.4286 | 89.8917 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.4615 | 15 | 0 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.5455 | 96.2963 | 92.8571 | 91.5152 | 26 | 1 | 26 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.4545 | 100.0000 | 91.3043 | 90.1709 | 20 | 0 | 21 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.4444 | 2 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8718 | 4 | 0 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | * | 98.8533 | 98.6747 | 99.0326 | 85.4529 | 819 | 11 | 819 | 8 | 1 | 12.5000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4488 | 97.9424 | 98.9605 | 85.8903 | 476 | 10 | 476 | 5 | 0 | 0.0000 | |