PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25851-25900 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1781 | 17 | 0 | 17 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.0854 | 99.3884 | 98.7842 | 83.4006 | 325 | 2 | 325 | 4 | 2 | 50.0000 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | * | 96.7083 | 98.8614 | 94.6470 | 78.3386 | 29001 | 334 | 28997 | 1640 | 151 | 9.2073 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | het | 95.2550 | 99.0419 | 91.7470 | 82.2690 | 18091 | 175 | 18087 | 1627 | 140 | 8.6048 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 82.1429 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.2298 | 98.5695 | 99.8991 | 63.8084 | 10887 | 158 | 10887 | 11 | 9 | 81.8182 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0000 | 83.0189 | 93.6170 | 89.3905 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | het | 83.6364 | 76.6667 | 92.0000 | 89.6266 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 94.1176 | 100.0000 | 88.8889 | 83.9286 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 92.8571 | 86.6667 | 100.0000 | 91.0959 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l125_m1_e0 | * | 99.2894 | 99.0830 | 99.4967 | 68.8733 | 29066 | 269 | 29062 | 147 | 101 | 68.7075 | |
| rpoplin-dv42 | SNP | ti | map_l125_m1_e0 | het | 99.1441 | 98.9434 | 99.3457 | 70.2153 | 18073 | 193 | 18069 | 119 | 74 | 62.1849 | |
| rpoplin-dv42 | SNP | ti | map_l125_m1_e0 | hetalt | 96.0000 | 100.0000 | 92.3077 | 81.6901 | 24 | 0 | 24 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l125_m1_e0 | homalt | 99.5372 | 99.3119 | 99.7635 | 66.3061 | 10969 | 76 | 10969 | 26 | 25 | 96.1538 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | * | 99.2363 | 99.0558 | 99.4176 | 68.8661 | 44899 | 428 | 44893 | 263 | 168 | 63.8783 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | het | 99.0847 | 98.9539 | 99.2159 | 70.0178 | 28095 | 297 | 28089 | 222 | 128 | 57.6577 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 84.5794 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | homalt | 99.4988 | 99.2251 | 99.7740 | 66.6415 | 16774 | 131 | 16774 | 38 | 37 | 97.3684 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.4869 | 97.9518 | 99.0279 | 85.4026 | 813 | 17 | 815 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.1263 | 96.9136 | 99.3697 | 85.6928 | 471 | 15 | 473 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 91.8919 | 100.0000 | 85.0000 | 94.2029 | 17 | 0 | 17 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3884 | 99.3884 | 99.3884 | 83.3672 | 325 | 2 | 325 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 90.1457 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6378 | 96.8750 | 98.4127 | 91.4286 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8983 | 19 | 0 | 19 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.4904 | 33 | 1 | 33 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 81.6901 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 88.8889 | 88.8889 | 88.8889 | 78.0488 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | * | 99.1341 | 99.0072 | 99.2613 | 68.8884 | 15857 | 159 | 15855 | 118 | 69 | 58.4746 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | het | 98.9777 | 98.9729 | 98.9825 | 69.6562 | 10022 | 104 | 10020 | 103 | 54 | 52.4272 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 84.5794 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | homalt | 99.4262 | 99.0614 | 99.7937 | 67.2577 | 5805 | 55 | 5805 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3020 | 98.3456 | 98.2585 | 85.8752 | 1070 | 18 | 1072 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | het | 98.0040 | 97.9339 | 98.0743 | 85.2983 | 711 | 15 | 713 | 14 | 3 | 21.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 96.8668 | 12 | 1 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.0014 | 99.4269 | 98.5795 | 85.3088 | 347 | 2 | 347 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.3396 | 92.5926 | 96.1538 | 92.5714 | 25 | 2 | 25 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.3077 | 90.0000 | 94.7368 | 91.8103 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.2105 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.9596 | 4 | 0 | 4 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m1_e0 | * | 84.7104 | 74.9376 | 97.4144 | 82.6672 | 12002 | 4014 | 11981 | 318 | 271 | 85.2201 | |
| qzeng-custom | SNP | tv | map_l125_m1_e0 | het | 85.2256 | 76.2789 | 96.5500 | 86.2555 | 7724 | 2402 | 7724 | 276 | 229 | 82.9710 | |
| qzeng-custom | SNP | tv | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.7959 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m1_e0 | homalt | 83.8172 | 72.6621 | 99.0185 | 65.9234 | 4258 | 1602 | 4237 | 42 | 42 | 100.0000 | |