PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25751-25800 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.3125 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.5696 | 99.4269 | 99.7126 | 82.3350 | 347 | 2 | 347 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.9155 | 98.7952 | 99.0361 | 84.0996 | 820 | 10 | 822 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4509 | 97.9424 | 98.9648 | 85.0418 | 476 | 10 | 478 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7660 | 17 | 0 | 17 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.2073 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.9573 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | het | 89.2857 | 83.3333 | 96.1538 | 89.8833 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.5246 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 90.6667 | 14 | 1 | 14 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 99.2158 | 99.0361 | 99.3961 | 84.2466 | 822 | 8 | 823 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 98.9652 | 98.3539 | 99.5842 | 84.9452 | 478 | 8 | 479 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2000 | 17 | 0 | 17 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.7780 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.4619 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 87.2727 | 80.0000 | 96.0000 | 89.8785 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9057 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 90.4110 | 14 | 1 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5753 | 98.5294 | 98.6213 | 85.3547 | 1072 | 16 | 1073 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 98.4902 | 98.7603 | 98.2216 | 85.1332 | 717 | 9 | 718 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9388 | 9 | 4 | 9 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.2826 | 99.1404 | 99.4253 | 84.3102 | 346 | 3 | 346 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 98.1818 | 100.0000 | 96.4286 | 94.9911 | 27 | 0 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.8454 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 89.6552 | 86.6667 | 92.8571 | 95.3642 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | het | 88.8889 | 88.8889 | 88.8889 | 91.6667 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3146 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 88.8781 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6378 | 96.8750 | 98.4127 | 90.3226 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.4262 | 19 | 0 | 19 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 87.3563 | 33 | 1 | 33 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||