PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25301-25350 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 54.5455 | 53.8462 | 55.2632 | 91.9718 | 63 | 54 | 63 | 51 | 28 | 54.9020 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 57.0736 | 54.6875 | 59.6774 | 93.7183 | 35 | 29 | 37 | 25 | 4 | 16.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 5.2632 | 0.0000 | 0.0000 | 1 | 18 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 61.3636 | 79.4118 | 50.0000 | 87.9908 | 27 | 7 | 26 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 58.9106 | 52.7711 | 66.6667 | 88.0351 | 438 | 392 | 436 | 218 | 187 | 85.7798 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 64.3883 | 66.6667 | 62.2605 | 88.3768 | 324 | 162 | 325 | 197 | 169 | 85.7868 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 5.8824 | 0.0000 | 0.0000 | 1 | 16 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 48.9837 | 34.5566 | 84.0909 | 86.4615 | 113 | 214 | 111 | 21 | 18 | 85.7143 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | * | 79.1043 | 74.1571 | 84.7587 | 76.7783 | 11877 | 4139 | 11873 | 2135 | 521 | 24.4028 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | het | 74.2570 | 68.0229 | 81.7491 | 80.4845 | 6888 | 3238 | 6889 | 1538 | 57 | 3.7061 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 75.5319 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | homalt | 87.0129 | 84.8123 | 89.3307 | 67.3979 | 4970 | 890 | 4965 | 593 | 461 | 77.7403 | |
| ciseli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 98.3607 | 0 | 15 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 95.4545 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | SNP | ti | map_l125_m1_e0 | * | 81.8023 | 77.7842 | 86.2580 | 75.7269 | 22818 | 6517 | 22798 | 3632 | 966 | 26.5969 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | het | 77.4977 | 72.0300 | 83.8636 | 79.8833 | 13157 | 5109 | 13154 | 2531 | 72 | 2.8447 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | hetalt | 74.4186 | 66.6667 | 84.2105 | 67.2414 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | homalt | 88.5271 | 87.3246 | 89.7632 | 65.2408 | 9645 | 1400 | 9628 | 1098 | 891 | 81.1475 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | * | 84.6397 | 74.3855 | 98.1731 | 83.5274 | 21821 | 7514 | 21817 | 406 | 44 | 10.8374 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | het | 88.7011 | 81.4464 | 97.3746 | 85.8996 | 14877 | 3389 | 14873 | 401 | 40 | 9.9751 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 88.3721 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m1_e0 | homalt | 77.0788 | 62.7343 | 99.9279 | 73.7914 | 6929 | 4116 | 6929 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 97.1042 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.5517 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5222 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.7368 | 100.0000 | 90.0000 | 97.2196 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.3526 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.6415 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1702 | 96.5812 | 95.7627 | 92.6980 | 113 | 4 | 113 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 94.6565 | 96.8750 | 92.5373 | 94.2637 | 62 | 2 | 62 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.2595 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.5899 | 33 | 1 | 33 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.3333 | 92.4528 | 94.2308 | 93.2292 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.8033 | 93.3333 | 90.3226 | 93.9216 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.0370 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.1373 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m1_e0 | * | 84.2159 | 73.9471 | 97.7967 | 84.1626 | 33518 | 11809 | 33512 | 755 | 58 | 7.6821 | |
| ckim-gatk | SNP | * | map_l125_m1_e0 | het | 88.2494 | 81.0510 | 96.8511 | 86.4318 | 23012 | 5380 | 23006 | 748 | 54 | 7.2193 | |
| ckim-gatk | SNP | * | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m1_e0 | homalt | 76.5547 | 62.0408 | 99.9333 | 74.4573 | 10488 | 6417 | 10488 | 7 | 4 | 57.1429 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 96.0274 | 98.7132 | 93.4839 | 90.1867 | 1074 | 14 | 1076 | 75 | 6 | 8.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 94.7425 | 99.0358 | 90.8060 | 91.1611 | 719 | 7 | 721 | 73 | 4 | 5.4795 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9900 | 9 | 4 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.2826 | 99.1404 | 99.4253 | 85.7785 | 346 | 3 | 346 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 97.7394 | 98.7952 | 96.7059 | 89.6278 | 820 | 10 | 822 | 28 | 3 | 10.7143 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.5689 | 98.1481 | 95.0397 | 91.4793 | 477 | 9 | 479 | 25 | 1 | 4.0000 | |