PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24951-25000 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | homalt | 99.7779 | 99.6510 | 99.9051 | 65.6341 | 16846 | 59 | 16847 | 16 | 16 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | het | 98.6886 | 97.7286 | 99.6676 | 58.7142 | 9896 | 230 | 9895 | 33 | 5 | 15.1515 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | homalt | 99.8377 | 99.7440 | 99.9316 | 65.7995 | 5845 | 15 | 5846 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m1_e0 | * | 97.8601 | 96.5354 | 99.2218 | 80.9241 | 2034 | 73 | 2040 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m1_e0 | het | 97.3392 | 95.8052 | 98.9231 | 79.2399 | 1279 | 56 | 1286 | 14 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 95.1282 | 36 | 4 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l125_m1_e0 | homalt | 98.9671 | 98.2240 | 99.7214 | 80.0832 | 719 | 13 | 716 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | * | 99.1074 | 98.4080 | 99.8167 | 62.4199 | 28868 | 467 | 28869 | 53 | 19 | 35.8491 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | het | 98.7165 | 97.6842 | 99.7708 | 60.2794 | 17843 | 423 | 17844 | 41 | 7 | 17.0732 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 24 | 0 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | homalt | 99.7461 | 99.6016 | 99.8910 | 65.4505 | 11001 | 44 | 11001 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | * | 99.1139 | 98.4703 | 99.7659 | 61.6627 | 15771 | 245 | 15771 | 37 | 9 | 24.3243 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.1074 | 0 | 0 | 14 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.5368 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.9167 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4522 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | * | 76.9628 | 67.9245 | 88.7755 | 80.5169 | 36 | 17 | 87 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | het | 72.5049 | 63.3333 | 84.7826 | 81.8182 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 73.5849 | 5 | 3 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.4720 | 80.0000 | 89.4737 | 80.7107 | 12 | 3 | 34 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | * | 97.7704 | 97.8860 | 97.6551 | 86.2578 | 1065 | 23 | 1291 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | het | 98.1053 | 98.3471 | 97.8648 | 84.7393 | 714 | 12 | 825 | 18 | 5 | 27.7778 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 72.7273 | 61.5385 | 88.8889 | 95.1872 | 8 | 5 | 16 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | homalt | 97.9462 | 98.2808 | 97.6139 | 87.6142 | 343 | 6 | 450 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 93.6170 | 95.7619 | 0 | 0 | 44 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 87.5000 | 95.8261 | 0 | 0 | 21 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.6667 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5312 | 0 | 0 | 21 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.1709 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.4737 | 85.0000 | 94.4444 | 87.2340 | 17 | 3 | 17 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.7500 | 1 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 94.8052 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | * | 41.1429 | 26.6667 | 90.0000 | 72.2222 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 68.1818 | 3 | 6 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 78.5714 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | * | 97.7465 | 97.5904 | 97.9032 | 84.3789 | 810 | 20 | 1214 | 26 | 17 | 65.3846 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | het | 97.4411 | 97.3251 | 97.5575 | 83.6658 | 473 | 13 | 679 | 17 | 10 | 58.8235 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 85.1296 | 76.4706 | 96.0000 | 92.3077 | 13 | 4 | 24 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7696 | 99.0826 | 98.4586 | 84.5167 | 324 | 3 | 511 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.4615 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.1481 | 0 | 0 | 1 | 0 | 0 | ||