PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24651-24700 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e0 | homalt | 96.1918 | 93.6813 | 98.8406 | 82.0686 | 341 | 23 | 341 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | * | 78.3333 | 74.6032 | 82.4561 | 90.1299 | 94 | 32 | 94 | 20 | 19 | 95.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | het | 83.3333 | 91.5493 | 76.4706 | 91.2099 | 65 | 6 | 65 | 20 | 19 | 95.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | homalt | 89.2308 | 80.5556 | 100.0000 | 84.5745 | 29 | 7 | 29 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | * | 99.1232 | 98.4718 | 99.7831 | 64.7024 | 46009 | 714 | 46011 | 100 | 28 | 28.0000 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | het | 98.7273 | 97.7659 | 99.7078 | 62.2269 | 28663 | 655 | 28664 | 84 | 12 | 14.2857 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | homalt | 99.7839 | 99.6604 | 99.9077 | 68.1589 | 17316 | 59 | 17317 | 16 | 16 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | * | 99.1334 | 98.5142 | 99.7605 | 64.2909 | 16244 | 245 | 16244 | 39 | 9 | 23.0769 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | het | 98.7191 | 97.7974 | 99.6584 | 61.3796 | 10212 | 230 | 10211 | 35 | 5 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | homalt | 99.8420 | 99.7507 | 99.9334 | 68.3459 | 6002 | 15 | 6003 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | * | 97.8771 | 96.5392 | 99.2527 | 82.4666 | 2120 | 76 | 2125 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | het | 97.4100 | 95.9022 | 98.9660 | 80.9349 | 1334 | 57 | 1340 | 14 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 95.5429 | 37 | 5 | 39 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | homalt | 98.9427 | 98.1651 | 99.7326 | 81.6352 | 749 | 14 | 746 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | * | 99.1183 | 98.4500 | 99.7957 | 64.8854 | 29789 | 469 | 29791 | 61 | 19 | 31.1475 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | het | 98.7318 | 97.7485 | 99.7352 | 62.6803 | 18451 | 425 | 18453 | 49 | 7 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 24 | 0 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | homalt | 99.7531 | 99.6126 | 99.8940 | 67.9785 | 11314 | 44 | 11314 | 12 | 12 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.4684 | 0 | 0 | 14 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 97.0696 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.2143 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.6190 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.2655 | 92.5926 | 96.0000 | 89.7959 | 25 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 94.8682 | 95.0000 | 94.7368 | 89.2045 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.6667 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.1111 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.0968 | 96.9379 | 99.2838 | 80.1281 | 1108 | 35 | 1109 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9502 | 96.8586 | 99.0667 | 78.0059 | 740 | 24 | 743 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 97.2906 | 12 | 3 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.7513 | 97.8022 | 99.7191 | 80.2770 | 356 | 8 | 355 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.0491 | 96.8495 | 99.2788 | 82.1574 | 830 | 27 | 826 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | het | 97.2343 | 95.5734 | 98.9540 | 80.5770 | 475 | 22 | 473 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.7627 | 18 | 1 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2619 | 98.8270 | 99.7006 | 80.6936 | 337 | 4 | 333 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e0 | * | 95.0495 | 90.5660 | 100.0000 | 87.7660 | 48 | 5 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e0 | het | 90.9091 | 83.3333 | 100.0000 | 87.0968 | 25 | 5 | 24 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6316 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.2105 | 15 | 0 | 15 | 0 | 0 | ||