PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24551-24600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.8551 | 7 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.7778 | 14 | 1 | 14 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | * | 84.6294 | 74.6420 | 97.7024 | 85.2765 | 34875 | 11848 | 34869 | 820 | 54 | 6.5854 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | het | 88.4835 | 81.5574 | 96.6953 | 87.4762 | 23911 | 5407 | 23905 | 817 | 51 | 6.2424 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | hetalt | 77.5510 | 63.3333 | 100.0000 | 93.0909 | 19 | 11 | 19 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | homalt | 77.2870 | 62.9928 | 99.9726 | 75.5188 | 10945 | 6430 | 10945 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | * | 85.0261 | 75.0281 | 98.0984 | 84.6739 | 22702 | 7556 | 22698 | 440 | 41 | 9.3182 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | het | 88.8720 | 81.8288 | 97.2418 | 86.9822 | 15446 | 3430 | 15442 | 438 | 39 | 8.9041 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4192 | 16 | 8 | 16 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | homalt | 77.8495 | 63.7436 | 99.9724 | 74.8690 | 7240 | 4118 | 7240 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | * | 56.0000 | 46.6667 | 70.0000 | 86.4865 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | het | 73.6842 | 77.7778 | 70.0000 | 83.6066 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | * | 62.0690 | 50.9434 | 79.4118 | 91.7073 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | het | 61.5385 | 53.3333 | 72.7273 | 93.3535 | 16 | 14 | 16 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 84.8101 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | * | 97.5865 | 97.1834 | 97.9930 | 76.8491 | 45407 | 1316 | 45407 | 930 | 284 | 30.5376 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | het | 96.7249 | 96.4527 | 96.9986 | 79.0213 | 28278 | 1040 | 28278 | 875 | 244 | 27.8857 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | homalt | 99.1290 | 98.5842 | 99.6799 | 71.9156 | 17129 | 246 | 17129 | 55 | 40 | 72.7273 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | * | 97.7706 | 97.1809 | 98.3675 | 76.0737 | 29405 | 853 | 29405 | 488 | 165 | 33.8115 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | het | 96.9503 | 96.4187 | 97.4878 | 78.3661 | 18200 | 676 | 18200 | 469 | 150 | 31.9829 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | homalt | 99.2383 | 98.6529 | 99.8307 | 70.9546 | 11205 | 153 | 11205 | 19 | 15 | 78.9474 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2020 | 91.9487 | 96.5686 | 87.1557 | 788 | 69 | 788 | 28 | 21 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | het | 93.6864 | 92.5553 | 94.8454 | 89.7981 | 460 | 37 | 460 | 25 | 18 | 72.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.6190 | 96.1877 | 99.0937 | 79.2996 | 328 | 13 | 328 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | tv | map_l125_m2_e0 | * | 97.1791 | 97.0465 | 97.3121 | 78.1370 | 16002 | 487 | 16002 | 442 | 119 | 26.9231 | |
| jpowers-varprowl | SNP | tv | map_l125_m2_e0 | het | 96.3204 | 96.5141 | 96.1274 | 80.0949 | 10078 | 364 | 10078 | 406 | 94 | 23.1527 | |
| jpowers-varprowl | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l125_m2_e0 | homalt | 98.9229 | 98.4544 | 99.3960 | 73.5628 | 5924 | 93 | 5924 | 36 | 25 | 69.4444 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | * | 97.2353 | 95.2641 | 99.2898 | 83.0932 | 2092 | 104 | 2097 | 15 | 3 | 20.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | het | 96.2239 | 93.3861 | 99.2395 | 79.6156 | 1299 | 92 | 1305 | 10 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 95.2670 | 37 | 5 | 39 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | homalt | 99.2113 | 99.0826 | 99.3404 | 85.1285 | 756 | 7 | 753 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.4217 | 0 | 0 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.7480 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.8723 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0296 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 90.1158 | 85.1852 | 95.6522 | 90.6504 | 23 | 4 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.3268 | 85.0000 | 94.1176 | 89.7590 | 17 | 3 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.9825 | 4 | 0 | 4 | 0 | 0 | ||