PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24301-24350 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5055 | 0 | 0 | 10 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | * | 67.2515 | 53.6756 | 90.0196 | 80.9186 | 460 | 397 | 460 | 51 | 46 | 90.1961 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | het | 63.7838 | 47.4849 | 97.1193 | 82.2238 | 236 | 261 | 236 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 77.4194 | 63.1579 | 100.0000 | 89.6552 | 12 | 7 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | homalt | 71.0218 | 62.1701 | 82.8125 | 78.5774 | 212 | 129 | 212 | 44 | 42 | 95.4545 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | * | 71.1252 | 62.2642 | 82.9268 | 86.1017 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | het | 73.2883 | 63.3333 | 86.9565 | 84.6667 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 82.3529 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | homalt | 59.2593 | 53.3333 | 66.6667 | 89.1892 | 8 | 7 | 8 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | * | 64.0610 | 50.1091 | 88.7802 | 61.1948 | 15162 | 15096 | 15161 | 1916 | 1690 | 88.2046 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | het | 62.0977 | 45.3857 | 98.2903 | 64.2784 | 8567 | 10309 | 8566 | 149 | 7 | 4.6980 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 77.7778 | 6 | 18 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | homalt | 66.8459 | 58.0120 | 78.8535 | 57.3303 | 6589 | 4769 | 6589 | 1767 | 1683 | 95.2462 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | * | 62.7919 | 49.6210 | 85.4813 | 62.5997 | 8182 | 8307 | 8178 | 1389 | 1218 | 87.6890 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | het | 61.4279 | 44.7328 | 98.0050 | 66.8730 | 4671 | 5771 | 4667 | 95 | 1 | 1.0526 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.3158 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | homalt | 64.7739 | 58.2018 | 73.0192 | 57.0520 | 3502 | 2515 | 3502 | 1294 | 1217 | 94.0495 | |
| mlin-fermikit | SNP | * | map_l125_m2_e0 | * | 63.6201 | 49.9497 | 87.5929 | 61.7303 | 23338 | 23385 | 23333 | 3305 | 2908 | 87.9879 | |
| mlin-fermikit | SNP | * | map_l125_m2_e0 | het | 61.8597 | 45.1531 | 98.1895 | 65.2404 | 13238 | 16080 | 13233 | 244 | 8 | 3.2787 | |
| mlin-fermikit | SNP | * | map_l125_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.3158 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l125_m2_e0 | homalt | 66.1120 | 58.0777 | 76.7260 | 57.2932 | 10091 | 7284 | 10091 | 3061 | 2900 | 94.7403 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | * | 97.8100 | 97.5410 | 98.0804 | 98.3346 | 2142 | 54 | 2146 | 42 | 15 | 35.7143 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | het | 97.4161 | 97.2682 | 97.5645 | 86.6946 | 1353 | 38 | 1362 | 34 | 9 | 26.4706 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.7080 | 34 | 8 | 29 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | homalt | 98.9515 | 98.9515 | 98.9515 | 85.7755 | 755 | 8 | 755 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | map_l125_m2_e0 | * | 99.2019 | 98.5888 | 99.8226 | 69.6014 | 29831 | 427 | 29831 | 53 | 27 | 50.9434 | |
| ndellapenna-hhga | SNP | ti | map_l125_m2_e0 | het | 98.8804 | 98.0239 | 99.7520 | 70.6633 | 18503 | 373 | 18503 | 46 | 20 | 43.4783 | |
| ndellapenna-hhga | SNP | ti | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 80.0000 | 20 | 4 | 20 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l125_m2_e0 | homalt | 99.7486 | 99.5598 | 99.9381 | 67.6520 | 11308 | 50 | 11308 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | * | 82.8587 | 74.2259 | 93.7640 | 91.6841 | 1630 | 566 | 2090 | 139 | 47 | 33.8129 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | het | 82.3208 | 74.2631 | 92.3398 | 93.0978 | 1033 | 358 | 1326 | 110 | 36 | 32.7273 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.2000 | 33 | 9 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m2_e0 | homalt | 83.6240 | 73.9187 | 96.2629 | 86.5020 | 564 | 199 | 747 | 29 | 11 | 37.9310 | |
| qzeng-custom | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 88.6076 | 0 | 0 | 0 | 9 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 85.4167 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 93.5484 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | * | 99.1430 | 98.5687 | 99.7239 | 69.3029 | 16253 | 236 | 16253 | 45 | 22 | 48.8889 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | het | 98.8271 | 98.0368 | 99.6302 | 69.6751 | 10237 | 205 | 10237 | 38 | 16 | 42.1053 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3944 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | homalt | 99.7253 | 99.5679 | 99.8833 | 68.5442 | 5991 | 26 | 5991 | 7 | 6 | 85.7143 | |