PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24201-24250 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 91.8425 | 88.6264 | 95.3008 | 90.1645 | 1013 | 130 | 1014 | 50 | 5 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 89.8280 | 86.6492 | 93.2489 | 90.9553 | 662 | 102 | 663 | 48 | 4 | 8.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.9770 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 95.8748 | 92.5824 | 99.4100 | 87.0065 | 337 | 27 | 337 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 94.2623 | 91.2698 | 97.4576 | 92.5174 | 115 | 11 | 115 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 94.2857 | 92.9577 | 95.6522 | 93.7838 | 66 | 5 | 66 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 87.6812 | 17 | 2 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 90.2736 | 32 | 4 | 32 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 90.4534 | 84.0140 | 97.9620 | 90.4179 | 720 | 137 | 721 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 85.0767 | 76.2575 | 96.2025 | 92.3568 | 379 | 118 | 380 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.9873 | 19 | 0 | 19 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.1342 | 94.4282 | 100.0000 | 85.3437 | 322 | 19 | 322 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 87.5000 | 79.2453 | 97.6744 | 94.2513 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.7598 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 94.6667 | 12 | 3 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.9450 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 84.2105 | 88.8889 | 80.0000 | 96.5870 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.5926 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m2_e0 | * | 47.7392 | 31.3764 | 99.7686 | 91.5938 | 14660 | 32063 | 14657 | 34 | 8 | 23.5294 | |
| asubramanian-gatk | SNP | * | map_l125_m2_e0 | het | 50.9572 | 34.2281 | 99.6721 | 92.5837 | 10035 | 19283 | 10032 | 33 | 8 | 24.2424 | |
| asubramanian-gatk | SNP | * | map_l125_m2_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 94.6970 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m2_e0 | homalt | 41.9933 | 26.5784 | 99.9784 | 88.1315 | 4618 | 12757 | 4618 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | * | 48.4647 | 32.0015 | 99.8144 | 91.1697 | 9683 | 20575 | 9681 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | het | 51.5556 | 34.7637 | 99.7264 | 92.2284 | 6562 | 12314 | 6560 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | homalt | 43.0457 | 27.4256 | 100.0000 | 87.5971 | 3115 | 8243 | 3115 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l125_m2_e0 | * | 46.3923 | 30.2201 | 99.7997 | 92.3039 | 4983 | 11506 | 4982 | 10 | 2 | 20.0000 | |
| asubramanian-gatk | SNP | tv | map_l125_m2_e0 | het | 49.8851 | 33.2599 | 99.7415 | 93.1706 | 3473 | 6969 | 3472 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 94.6970 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l125_m2_e0 | homalt | 39.9681 | 24.9792 | 99.9335 | 89.0706 | 1503 | 4514 | 1503 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | * | 98.3684 | 98.7250 | 98.0144 | 88.4715 | 2168 | 28 | 2172 | 44 | 9 | 20.4545 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | het | 97.9642 | 98.4184 | 97.5142 | 89.0844 | 1369 | 22 | 1373 | 35 | 5 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 92.5512 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | homalt | 99.1509 | 99.4758 | 98.8281 | 86.7266 | 759 | 4 | 759 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | * | 93.1034 | 100.0000 | 87.0968 | 96.9578 | 27 | 0 | 27 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.0549 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6170 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.3333 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |