PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23451-23500 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.7654 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8360 | 98.9498 | 98.7224 | 87.0837 | 848 | 9 | 850 | 11 | 2 | 18.1818 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.2912 | 98.1891 | 98.3936 | 88.4562 | 488 | 9 | 490 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5593 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 83.2766 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.8273 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 95.6790 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0060 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.9757 | 96.0317 | 100.0000 | 89.1577 | 121 | 5 | 121 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8417 | 95.7746 | 100.0000 | 90.5556 | 68 | 3 | 68 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.2595 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 86.7925 | 35 | 1 | 35 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.6522 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 94.7644 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.6667 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.9520 | 99.0376 | 98.8666 | 84.6288 | 1132 | 11 | 1134 | 13 | 3 | 23.0769 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | het | 98.7626 | 99.0838 | 98.4436 | 84.5181 | 757 | 7 | 759 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.6229 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.5873 | 99.4505 | 99.7245 | 83.3867 | 362 | 2 | 362 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8315 | 98.5998 | 99.0643 | 85.4245 | 845 | 12 | 847 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.3826 | 97.7867 | 98.9858 | 86.3018 | 486 | 11 | 488 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 93.3824 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 82.7569 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 91.1488 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e0 | het | 89.2857 | 83.3333 | 96.1538 | 90.8451 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.4110 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 91.9540 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l125_m2_e0 | * | 99.5641 | 99.4949 | 99.6335 | 71.1339 | 46487 | 236 | 46481 | 171 | 26 | 15.2047 | |
| hfeng-pmm3 | SNP | * | map_l125_m2_e0 | het | 99.4247 | 99.3281 | 99.5214 | 72.2786 | 29121 | 197 | 29115 | 140 | 13 | 9.2857 | |
| hfeng-pmm3 | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l125_m2_e0 | homalt | 99.7985 | 99.7755 | 99.8215 | 68.9465 | 17336 | 39 | 17336 | 31 | 13 | 41.9355 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | * | 99.5898 | 99.5076 | 99.6722 | 70.9814 | 30109 | 149 | 30105 | 99 | 16 | 16.1616 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | het | 99.4510 | 99.3325 | 99.5698 | 72.2770 | 18750 | 126 | 18746 | 81 | 8 | 9.8765 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | homalt | 99.8195 | 99.7975 | 99.8415 | 68.5286 | 11335 | 23 | 11335 | 18 | 8 | 44.4444 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | * | 99.5176 | 99.4724 | 99.5629 | 71.4177 | 16402 | 87 | 16400 | 72 | 10 | 13.8889 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | het | 99.3771 | 99.3201 | 99.4342 | 72.2814 | 10371 | 71 | 10369 | 59 | 5 | 8.4746 | |
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l125_m2_e0 | homalt | 99.7590 | 99.7341 | 99.7838 | 69.7058 | 6001 | 16 | 6001 | 13 | 5 | 38.4615 | |
| jlack-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||