PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23301-23350 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | map_l125_m2_e0 | * | 67.7061 | 62.3406 | 74.0821 | 90.8144 | 1369 | 827 | 1372 | 480 | 310 | 64.5833 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | het | 68.9335 | 65.4925 | 72.7562 | 91.5977 | 911 | 480 | 916 | 343 | 203 | 59.1837 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 2 | 40 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m2_e0 | homalt | 67.2566 | 59.7641 | 76.8971 | 88.5455 | 456 | 307 | 456 | 137 | 107 | 78.1022 | |
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 5.8824 | 97.5398 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 99.2481 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 6.6667 | 96.4706 | 0 | 0 | 1 | 14 | 2 | 14.2857 | |
| cchapple-custom | SNP | tv | map_l125_m2_e0 | * | 96.6110 | 97.3619 | 95.8717 | 75.9113 | 16054 | 435 | 16047 | 691 | 117 | 16.9320 | |
| cchapple-custom | SNP | tv | map_l125_m2_e0 | het | 95.6050 | 97.6250 | 93.6669 | 79.2937 | 10194 | 248 | 10220 | 691 | 117 | 16.9320 | |
| cchapple-custom | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e0 | homalt | 98.4215 | 96.8921 | 100.0000 | 65.2969 | 5830 | 187 | 5827 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 66.6667 | 51.8519 | 93.3333 | 94.9495 | 14 | 13 | 14 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.4211 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5517 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | * | 76.8250 | 72.2660 | 81.9980 | 90.9083 | 826 | 317 | 829 | 182 | 82 | 45.0549 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 75.0226 | 68.7173 | 82.6019 | 92.3012 | 525 | 239 | 527 | 111 | 23 | 20.7207 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 81.6849 | 82.4176 | 80.9651 | 86.8337 | 300 | 64 | 302 | 71 | 59 | 83.0986 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | * | 94.3396 | 94.3396 | 94.3396 | 92.5457 | 50 | 3 | 50 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | het | 93.3333 | 93.3333 | 93.3333 | 93.0070 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 92.6267 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | map_l125_m2_e0 | * | 98.4121 | 99.1176 | 97.7165 | 74.4145 | 29991 | 267 | 29998 | 701 | 81 | 11.5549 | |
| ckim-dragen | SNP | ti | map_l125_m2_e0 | het | 97.7337 | 99.0305 | 96.4704 | 78.2642 | 18693 | 183 | 18695 | 684 | 65 | 9.5029 | |
| ckim-dragen | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l125_m2_e0 | homalt | 99.5541 | 99.2604 | 99.8495 | 63.2256 | 11274 | 84 | 11279 | 17 | 16 | 94.1176 | |
| ckim-dragen | SNP | tv | map_l125_m2_e0 | * | 98.4063 | 99.0539 | 97.7671 | 75.5410 | 16333 | 156 | 16332 | 373 | 39 | 10.4558 | |
| ckim-dragen | SNP | tv | map_l125_m2_e0 | het | 97.7368 | 98.8508 | 96.6476 | 79.0398 | 10322 | 120 | 10321 | 358 | 26 | 7.2626 | |
| ckim-dragen | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 83.0409 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l125_m2_e0 | homalt | 99.5838 | 99.4183 | 99.7499 | 65.0891 | 5982 | 35 | 5982 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | * | map_l125_m2_e0 | * | 98.4092 | 99.0947 | 97.7332 | 74.8209 | 46300 | 423 | 46306 | 1074 | 120 | 11.1732 | |
| ckim-dragen | SNP | * | map_l125_m2_e0 | het | 97.7348 | 98.9665 | 96.5334 | 78.5462 | 29015 | 303 | 29016 | 1042 | 91 | 8.7332 | |
| ckim-dragen | SNP | * | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 83.0409 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l125_m2_e0 | homalt | 99.5644 | 99.3151 | 99.8150 | 63.8939 | 17256 | 119 | 17261 | 32 | 29 | 90.6250 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | * | 96.6334 | 98.5428 | 94.7967 | 91.3207 | 2164 | 32 | 2168 | 119 | 11 | 9.2437 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | het | 95.3815 | 98.4903 | 92.4630 | 92.4771 | 1370 | 21 | 1374 | 112 | 7 | 6.2500 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 93.5875 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m2_e0 | homalt | 99.1487 | 99.2136 | 99.0838 | 87.3090 | 757 | 6 | 757 | 7 | 4 | 57.1429 | |
| ckim-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||