PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23251-23300 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 96.1538 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | SNP | ti | map_l125_m2_e0 | * | 82.0578 | 78.1149 | 86.4200 | 77.2839 | 23636 | 6622 | 23616 | 3711 | 984 | 26.5158 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | het | 77.8322 | 72.4359 | 84.0972 | 81.0572 | 13673 | 5203 | 13670 | 2585 | 72 | 2.7853 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | hetalt | 74.4186 | 66.6667 | 84.2105 | 73.6111 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | homalt | 88.6940 | 87.5770 | 89.8399 | 67.8832 | 9947 | 1411 | 9930 | 1123 | 909 | 80.9439 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | * | 79.3554 | 74.4800 | 84.9139 | 78.4079 | 12281 | 4208 | 12276 | 2181 | 537 | 24.6217 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | het | 74.6164 | 68.4639 | 81.9839 | 81.7497 | 7149 | 3293 | 7149 | 1571 | 62 | 3.9465 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | homalt | 87.1292 | 84.9759 | 89.3945 | 70.0273 | 5113 | 904 | 5108 | 606 | 472 | 77.8878 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | * | 96.6158 | 96.9035 | 96.3299 | 89.2603 | 2128 | 68 | 2126 | 81 | 13 | 16.0494 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | het | 95.7173 | 96.4055 | 95.0390 | 90.2021 | 1341 | 50 | 1341 | 70 | 7 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 92.9119 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m2_e0 | homalt | 98.4233 | 98.2962 | 98.5507 | 86.5115 | 750 | 13 | 748 | 11 | 6 | 54.5455 | |
| ckim-dragen | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | * | 83.3333 | 92.5926 | 75.7576 | 97.6035 | 25 | 2 | 25 | 8 | 1 | 12.5000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | het | 84.4444 | 95.0000 | 76.0000 | 97.5822 | 19 | 1 | 19 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.5946 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | * | 97.0354 | 97.4628 | 96.6116 | 88.3585 | 1114 | 29 | 1112 | 39 | 5 | 12.8205 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | het | 96.3746 | 97.5131 | 95.2625 | 88.9141 | 745 | 19 | 744 | 37 | 3 | 8.1081 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.8333 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.7544 | 98.0769 | 99.4413 | 85.9828 | 357 | 7 | 356 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 91.7278 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | het | 96.5035 | 97.1831 | 95.8333 | 92.7565 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 84.5455 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.1392 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.4286 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.8333 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 95.4023 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | * | 96.7213 | 96.3827 | 97.0623 | 87.8080 | 826 | 31 | 826 | 25 | 6 | 24.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | het | 95.2520 | 94.7686 | 95.7404 | 89.4183 | 471 | 26 | 472 | 21 | 3 | 14.2857 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.8854 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.8253 | 98.8270 | 98.8235 | 83.5590 | 337 | 4 | 336 | 4 | 3 | 75.0000 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | * | 97.1171 | 96.9958 | 97.2387 | 74.5555 | 29349 | 909 | 29334 | 833 | 230 | 27.6110 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | het | 96.4167 | 97.1816 | 95.6637 | 78.2290 | 18344 | 532 | 18355 | 832 | 229 | 27.5240 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m2_e0 | homalt | 98.3080 | 96.6808 | 99.9909 | 63.9160 | 10981 | 377 | 10979 | 1 | 1 | 100.0000 | |