PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23201-23250 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 96.8000 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 95.7895 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | * | 96.1629 | 97.2003 | 95.1473 | 85.5786 | 1111 | 32 | 1098 | 56 | 6 | 10.7143 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 95.2845 | 97.3822 | 93.2752 | 86.3249 | 744 | 20 | 749 | 54 | 4 | 7.4074 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 93.3333 | 0.0000 | 0.0000 | 14 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.1888 | 96.9780 | 99.4302 | 83.5211 | 353 | 11 | 349 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 94.1710 | 93.6508 | 94.6970 | 88.3082 | 118 | 8 | 125 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 94.8166 | 95.7746 | 93.8776 | 89.0503 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | homalt | 94.2857 | 91.6667 | 97.0588 | 85.4701 | 33 | 3 | 33 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 96.9697 | 100.0000 | 94.1176 | 96.2138 | 15 | 0 | 16 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 96.2963 | 100.0000 | 92.8571 | 95.2703 | 9 | 0 | 13 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 95.1923 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.9219 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 96.8251 | 96.3827 | 97.2716 | 86.3349 | 826 | 31 | 820 | 23 | 6 | 26.0870 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 95.7357 | 95.5734 | 95.8984 | 87.7950 | 475 | 22 | 491 | 21 | 5 | 23.8095 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6662 | 97.9472 | 99.3958 | 83.2320 | 334 | 7 | 329 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 92.1176 | 88.6792 | 95.8333 | 92.3323 | 47 | 6 | 46 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 88.3191 | 83.3333 | 93.9394 | 92.8726 | 25 | 5 | 31 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.7975 | 15 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m2_e0 | * | 96.9367 | 97.1235 | 96.7507 | 75.0489 | 45379 | 1344 | 45379 | 1524 | 347 | 22.7690 | |
| cchapple-custom | SNP | * | map_l125_m2_e0 | het | 96.1245 | 97.3395 | 94.9395 | 78.6207 | 28538 | 780 | 28573 | 1523 | 346 | 22.7183 | |
| cchapple-custom | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m2_e0 | homalt | 98.3473 | 96.7540 | 99.9941 | 64.3980 | 16811 | 564 | 16806 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 55.0607 | 53.9683 | 56.1983 | 92.1986 | 68 | 58 | 68 | 53 | 29 | 54.7170 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 57.4870 | 54.9296 | 60.2941 | 93.6685 | 39 | 32 | 41 | 27 | 5 | 18.5185 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 5.2632 | 0.0000 | 0.0000 | 1 | 18 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | homalt | 61.5635 | 77.7778 | 50.9434 | 88.8889 | 28 | 8 | 27 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 59.1149 | 52.9755 | 66.8639 | 88.9180 | 454 | 403 | 452 | 224 | 193 | 86.1607 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 64.4414 | 66.8008 | 62.2430 | 89.2549 | 332 | 165 | 333 | 202 | 174 | 86.1386 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 5.2632 | 0.0000 | 0.0000 | 1 | 18 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 49.9618 | 35.4839 | 84.3972 | 87.4219 | 121 | 220 | 119 | 22 | 19 | 86.3636 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 25.0000 | 15.0943 | 72.7273 | 95.2586 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 27.7778 | 16.6667 | 83.3333 | 96.3190 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.7536 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | * | 81.1188 | 76.8380 | 85.9047 | 77.6345 | 35901 | 10822 | 35830 | 5879 | 1516 | 25.7867 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | het | 76.6942 | 71.0212 | 83.3520 | 81.2570 | 20822 | 8496 | 20798 | 4154 | 134 | 3.2258 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | homalt | 88.1697 | 86.6763 | 89.7155 | 68.5746 | 15060 | 2315 | 15013 | 1721 | 1379 | 80.1278 | |
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 98.6301 | 0 | 15 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||