PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22951-23000 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | homalt | 87.8788 | 78.3784 | 100.0000 | 84.8315 | 29 | 8 | 27 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 50.0000 | 96.1443 | 0 | 0 | 31 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 42.5926 | 96.2185 | 0 | 0 | 23 | 31 | 4 | 12.9032 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5556 | 0 | 0 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | * | 96.8910 | 95.7753 | 98.0329 | 87.0344 | 2131 | 94 | 2143 | 43 | 9 | 20.9302 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | het | 96.1685 | 94.7443 | 97.6361 | 86.4189 | 1334 | 74 | 1363 | 33 | 3 | 9.0909 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | hetalt | 88.3117 | 79.0698 | 100.0000 | 95.5959 | 34 | 9 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | homalt | 98.6425 | 98.5788 | 98.7063 | 87.5222 | 763 | 11 | 763 | 10 | 6 | 60.0000 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | * | 99.2798 | 99.6598 | 98.9027 | 74.7802 | 30465 | 104 | 29925 | 332 | 21 | 6.3253 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | het | 98.9249 | 99.5547 | 98.3030 | 76.7768 | 19002 | 85 | 18595 | 321 | 15 | 4.6729 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 24 | 0 | 176 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | homalt | 99.8678 | 99.8342 | 99.9015 | 70.5782 | 11439 | 19 | 11154 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | * | 97.8961 | 99.7599 | 96.1008 | 75.5270 | 16617 | 40 | 16513 | 670 | 17 | 2.5373 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | het | 96.8040 | 99.7441 | 94.0321 | 77.0079 | 10526 | 27 | 10415 | 661 | 13 | 1.9667 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | hetalt | 99.5392 | 100.0000 | 99.0826 | 73.6715 | 30 | 0 | 108 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | homalt | 99.8263 | 99.7860 | 99.8666 | 72.2636 | 6061 | 13 | 5990 | 8 | 4 | 50.0000 | |
| gduggal-bwafb | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | * | 98.7976 | 99.6949 | 97.9163 | 74.9861 | 47058 | 144 | 45676 | 972 | 38 | 3.9095 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | het | 98.1785 | 99.6221 | 96.7760 | 76.7928 | 29528 | 112 | 28607 | 953 | 28 | 2.9381 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | hetalt | 99.7481 | 100.0000 | 99.4975 | 71.0756 | 30 | 0 | 198 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | homalt | 99.8554 | 99.8175 | 99.8934 | 71.0933 | 17500 | 32 | 16871 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | * | 98.7944 | 99.6939 | 97.9109 | 74.9243 | 46580 | 143 | 45227 | 965 | 38 | 3.9378 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | het | 98.1728 | 99.6214 | 96.7658 | 76.7357 | 29207 | 111 | 28304 | 946 | 28 | 2.9598 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | hetalt | 99.7442 | 100.0000 | 99.4898 | 71.2188 | 30 | 0 | 195 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | homalt | 99.8542 | 99.8158 | 99.8925 | 71.0277 | 17343 | 32 | 16728 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | * | 97.8880 | 99.7574 | 96.0874 | 75.4411 | 16449 | 40 | 16356 | 666 | 17 | 2.5526 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | het | 96.7900 | 99.7414 | 94.0082 | 76.9260 | 10415 | 27 | 10308 | 657 | 13 | 1.9787 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | hetalt | 99.5349 | 100.0000 | 99.0741 | 73.5941 | 30 | 0 | 107 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | homalt | 99.8247 | 99.7839 | 99.8655 | 72.1762 | 6004 | 13 | 5941 | 8 | 4 | 50.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | * | 96.9636 | 95.8106 | 98.1447 | 86.9397 | 2104 | 92 | 2116 | 40 | 8 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | het | 96.1556 | 94.6801 | 97.6778 | 86.3185 | 1317 | 74 | 1346 | 32 | 2 | 6.2500 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 95.5381 | 34 | 8 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | homalt | 98.8189 | 98.6894 | 98.9488 | 87.4319 | 753 | 10 | 753 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | * | 99.2792 | 99.6596 | 98.9018 | 74.7286 | 30155 | 103 | 29629 | 329 | 21 | 6.3830 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | het | 98.9240 | 99.5550 | 98.3009 | 76.7289 | 18792 | 84 | 18398 | 318 | 15 | 4.7170 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.4885 | 24 | 0 | 173 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | homalt | 99.8667 | 99.8327 | 99.9006 | 70.5235 | 11339 | 19 | 11058 | 11 | 6 | 54.5455 | |