PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22801-22850 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | * | 97.5594 | 96.5517 | 98.5882 | 86.5761 | 840 | 30 | 838 | 12 | 2 | 16.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | het | 96.4880 | 94.4882 | 98.5743 | 86.6285 | 480 | 28 | 484 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 94.8718 | 18 | 1 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1304 | 99.7085 | 98.5591 | 85.6966 | 342 | 1 | 342 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | * | 94.4016 | 91.4062 | 97.6000 | 88.7691 | 117 | 11 | 122 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | het | 94.5127 | 91.5493 | 97.6744 | 86.6460 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 92.1053 | 17 | 3 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.6473 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e1 | * | 42.1053 | 26.6667 | 100.0000 | 88.5714 | 4 | 11 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 83.3333 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l125_m2_e1 | * | 98.8522 | 98.8878 | 98.8166 | 74.3375 | 46677 | 525 | 46677 | 559 | 136 | 24.3292 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e1 | het | 98.4726 | 98.7517 | 98.1951 | 76.1869 | 29270 | 370 | 29270 | 538 | 123 | 22.8625 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 79.7203 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l125_m2_e1 | homalt | 99.4990 | 99.1216 | 99.8793 | 70.3837 | 17378 | 154 | 17378 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | * | 98.9476 | 98.8812 | 99.0140 | 74.0560 | 30227 | 342 | 30227 | 301 | 85 | 28.2392 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | het | 98.6133 | 98.7321 | 98.4947 | 75.9784 | 18845 | 242 | 18845 | 288 | 78 | 27.0833 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.7368 | 24 | 0 | 24 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | homalt | 99.5050 | 99.1272 | 99.8857 | 70.0171 | 11358 | 100 | 11358 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | * | 83.8710 | 73.5849 | 97.5000 | 88.7955 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | het | 72.3404 | 56.6667 | 100.0000 | 90.3382 | 17 | 13 | 20 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 80.9524 | 7 | 1 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.7742 | 100.0000 | 93.7500 | 87.5969 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | * | 82.3529 | 75.0000 | 91.3043 | 90.1709 | 21 | 7 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | het | 86.7470 | 80.0000 | 94.7368 | 84.8000 | 16 | 4 | 18 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 50.0000 | 100.0000 | 2 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.2617 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e1 | * | 97.7499 | 97.6664 | 97.8336 | 87.0352 | 1130 | 27 | 1129 | 25 | 3 | 12.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e1 | het | 97.4146 | 97.7922 | 97.0399 | 86.1324 | 753 | 17 | 754 | 23 | 1 | 4.3478 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.3801 | 10 | 5 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0553 | 98.6559 | 99.4580 | 88.0078 | 367 | 5 | 367 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | * | 76.7237 | 62.5169 | 99.2862 | 94.5201 | 1391 | 834 | 1391 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | het | 79.5754 | 66.5483 | 98.9440 | 95.1306 | 937 | 471 | 937 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | hetalt | 71.6418 | 55.8140 | 100.0000 | 97.4737 | 24 | 19 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | homalt | 71.4286 | 55.5556 | 100.0000 | 91.6796 | 430 | 344 | 430 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | * | 78.1152 | 64.4771 | 99.0704 | 94.2799 | 746 | 411 | 746 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | het | 80.4615 | 67.9221 | 98.6792 | 94.7881 | 523 | 247 | 523 | 7 | 1 | 14.2857 | |