PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22351-22400 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 89.4737 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 97.4684 | 0 | 0 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.8000 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.8947 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0769 | 0 | 0 | 4 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | * | 92.9861 | 91.4607 | 94.5632 | 88.4195 | 2035 | 190 | 2035 | 117 | 81 | 69.2308 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | het | 92.8294 | 93.3239 | 92.3401 | 89.9662 | 1314 | 94 | 1314 | 109 | 76 | 69.7248 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | homalt | 95.9415 | 93.1525 | 98.9026 | 83.4356 | 721 | 53 | 721 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | * | 94.5581 | 93.8634 | 95.2632 | 87.2725 | 1086 | 71 | 1086 | 54 | 28 | 51.8519 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | het | 94.7368 | 95.8442 | 93.6548 | 88.7251 | 738 | 32 | 738 | 50 | 27 | 54.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | homalt | 96.1326 | 93.5484 | 98.8636 | 82.1138 | 348 | 24 | 348 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | * | 77.3663 | 73.4375 | 81.7391 | 90.2294 | 94 | 34 | 94 | 21 | 20 | 95.2381 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 82.8025 | 91.5493 | 75.5814 | 91.2779 | 65 | 6 | 65 | 21 | 20 | 95.2381 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | homalt | 87.8788 | 78.3784 | 100.0000 | 84.8168 | 29 | 8 | 29 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.7692 | 75.0000 | 87.5000 | 98.3146 | 21 | 7 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | het | 87.8049 | 90.0000 | 85.7143 | 97.6923 | 18 | 2 | 18 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4163 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | * | 84.0047 | 74.0950 | 96.9745 | 86.2788 | 12342 | 4315 | 12340 | 385 | 14 | 3.6364 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | het | 87.8827 | 81.2376 | 95.7119 | 88.2796 | 8573 | 1980 | 8571 | 384 | 13 | 3.3854 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 77.5510 | 63.3333 | 100.0000 | 93.0909 | 19 | 11 | 19 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | homalt | 76.3359 | 61.7386 | 99.9733 | 76.6438 | 3750 | 2324 | 3750 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | * | 97.5993 | 97.1950 | 98.0069 | 76.8922 | 45878 | 1324 | 45878 | 933 | 285 | 30.5466 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | het | 96.7434 | 96.4676 | 97.0208 | 79.0695 | 28593 | 1047 | 28593 | 878 | 245 | 27.9043 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | homalt | 99.1340 | 98.5911 | 99.6828 | 71.9295 | 17285 | 247 | 17285 | 55 | 40 | 72.7273 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e1 | * | 97.7851 | 97.1965 | 98.3808 | 76.1142 | 29712 | 857 | 29712 | 489 | 165 | 33.7423 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e1 | het | 96.9708 | 96.4374 | 97.5102 | 78.4083 | 18407 | 680 | 18407 | 470 | 150 | 31.9149 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l125_m2_e1 | homalt | 99.2450 | 98.6647 | 99.8322 | 70.9730 | 11305 | 153 | 11305 | 19 | 15 | 78.9474 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | * | 94.1730 | 91.9540 | 96.5018 | 87.3047 | 800 | 70 | 800 | 29 | 21 | 72.4138 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 93.6255 | 92.5197 | 94.7581 | 89.8693 | 470 | 38 | 470 | 26 | 18 | 69.2308 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.6331 | 96.2099 | 99.0991 | 79.6206 | 330 | 13 | 330 | 3 | 3 | 100.0000 | |