PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22001-22050 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | map_l125_m2_e1 | * | 78.4183 | 65.0787 | 98.6367 | 88.3507 | 1448 | 777 | 1447 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | het | 80.8213 | 68.5369 | 98.4709 | 89.9312 | 965 | 443 | 966 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | hetalt | 81.4312 | 72.0930 | 93.5484 | 92.4939 | 31 | 12 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | homalt | 73.5557 | 58.3979 | 99.3407 | 81.3295 | 452 | 322 | 452 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e1 | * | 18.7500 | 10.7143 | 75.0000 | 97.8610 | 3 | 25 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e1 | het | 9.0909 | 5.0000 | 50.0000 | 98.6207 | 1 | 19 | 1 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | * | 79.3602 | 66.4650 | 98.4635 | 87.9214 | 769 | 388 | 769 | 12 | 6 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | het | 82.2394 | 70.6494 | 98.3784 | 89.0597 | 544 | 226 | 546 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.7273 | 66.6667 | 80.0000 | 96.0630 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | homalt | 73.1293 | 57.7957 | 99.5370 | 81.0360 | 215 | 157 | 215 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e1 | * | 59.4595 | 42.9688 | 96.4912 | 90.9236 | 55 | 73 | 55 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e1 | het | 48.4211 | 32.3944 | 95.8333 | 94.8276 | 23 | 48 | 23 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 83.3333 | 75.0000 | 93.7500 | 82.6087 | 15 | 5 | 15 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e1 | homalt | 62.9630 | 45.9459 | 100.0000 | 76.3889 | 17 | 20 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | SNP | tv | map_l125_m2_e1 | * | 83.9775 | 73.9449 | 97.1598 | 86.1410 | 12317 | 4340 | 12315 | 360 | 15 | 4.1667 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | het | 87.8849 | 81.0480 | 95.9816 | 88.0637 | 8553 | 2000 | 8551 | 358 | 15 | 4.1899 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e1 | homalt | 76.2777 | 61.6727 | 99.9466 | 77.3753 | 3746 | 2328 | 3746 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | * | 98.4134 | 99.0575 | 97.7776 | 75.6170 | 16500 | 157 | 16499 | 375 | 39 | 10.4000 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | het | 97.7464 | 98.8534 | 96.6639 | 79.1212 | 10432 | 121 | 10431 | 360 | 26 | 7.2222 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 83.0409 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l125_m2_e1 | homalt | 99.5877 | 99.4238 | 99.7522 | 65.1046 | 6039 | 35 | 6039 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | * | map_l125_m2_e1 | * | 98.4159 | 99.0996 | 97.7415 | 74.8940 | 46777 | 425 | 46783 | 1081 | 120 | 11.1008 | |
| ckim-dragen | SNP | * | map_l125_m2_e1 | het | 97.7443 | 98.9710 | 96.5476 | 78.6185 | 29335 | 305 | 29336 | 1049 | 91 | 8.6749 | |
| ckim-dragen | SNP | * | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 83.0409 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l125_m2_e1 | homalt | 99.5683 | 99.3212 | 99.8166 | 63.9224 | 17413 | 119 | 17418 | 32 | 29 | 90.6250 | |
| ckim-dragen | SNP | ti | map_l125_m2_e1 | * | 98.4185 | 99.1233 | 97.7236 | 74.4858 | 30301 | 268 | 30308 | 706 | 81 | 11.4731 | |
| ckim-dragen | SNP | ti | map_l125_m2_e1 | het | 97.7431 | 99.0360 | 96.4836 | 78.3312 | 18903 | 184 | 18905 | 689 | 65 | 9.4340 | |
| ckim-dragen | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l125_m2_e1 | homalt | 99.5580 | 99.2669 | 99.8508 | 63.2612 | 11374 | 84 | 11379 | 17 | 16 | 94.1176 | |
| ckim-gatk | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||