PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21901-21950 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 5.8824 | 97.5540 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 99.2537 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 6.6667 | 96.4871 | 0 | 0 | 1 | 14 | 2 | 14.2857 | |
| cchapple-custom | SNP | tv | map_l125_m2_e1 | * | 96.6306 | 97.3885 | 95.8843 | 75.9688 | 16222 | 435 | 16215 | 696 | 117 | 16.8103 | |
| cchapple-custom | SNP | tv | map_l125_m2_e1 | het | 95.6281 | 97.6500 | 93.6882 | 79.3490 | 10305 | 248 | 10331 | 696 | 117 | 16.8103 | |
| cchapple-custom | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e1 | homalt | 98.4366 | 96.9213 | 100.0000 | 65.3352 | 5887 | 187 | 5884 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m2_e1 | * | 67.9362 | 62.5618 | 74.3207 | 90.8519 | 1392 | 833 | 1395 | 482 | 312 | 64.7303 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | het | 69.1293 | 65.6960 | 72.9412 | 91.6361 | 925 | 483 | 930 | 345 | 205 | 59.4203 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 4.6512 | 0.0000 | 0.0000 | 2 | 41 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m2_e1 | homalt | 67.5872 | 60.0775 | 77.2425 | 88.5833 | 465 | 309 | 465 | 137 | 107 | 78.1022 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 65.1163 | 50.0000 | 93.3333 | 95.0000 | 14 | 14 | 14 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 93.5065 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5753 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 76.9744 | 72.4287 | 82.1289 | 90.9356 | 838 | 319 | 841 | 183 | 83 | 45.3552 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 75.0932 | 68.8312 | 82.6087 | 92.3470 | 530 | 240 | 532 | 112 | 24 | 21.4286 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 81.9169 | 82.5269 | 81.3158 | 86.8147 | 307 | 65 | 309 | 71 | 59 | 83.0986 | |
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | map_l125_m2_e1 | * | 97.1333 | 97.0166 | 97.2504 | 74.6114 | 29657 | 912 | 29639 | 838 | 230 | 27.4463 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | het | 96.4352 | 97.1970 | 95.6851 | 78.2763 | 18552 | 535 | 18561 | 837 | 229 | 27.3596 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m2_e1 | homalt | 98.3230 | 96.7097 | 99.9910 | 63.9684 | 11081 | 377 | 11078 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 25.0000 | 15.0943 | 72.7273 | 95.2991 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 27.7778 | 16.6667 | 83.3333 | 96.3415 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.8571 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | * | 81.1911 | 76.9289 | 85.9532 | 77.6472 | 36312 | 10890 | 36237 | 5922 | 1525 | 25.7514 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | het | 76.8097 | 71.1707 | 83.4191 | 81.2554 | 21095 | 8545 | 21070 | 4188 | 136 | 3.2474 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | homalt | 88.1920 | 86.6872 | 89.7500 | 68.5967 | 15198 | 2334 | 15148 | 1730 | 1386 | 80.1156 | |
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 98.7179 | 0 | 15 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 96.4286 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 59.4882 | 53.3333 | 67.2489 | 88.9869 | 464 | 406 | 462 | 225 | 194 | 86.2222 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 64.8655 | 67.1260 | 62.7523 | 89.2822 | 341 | 167 | 342 | 203 | 175 | 86.2069 | |