PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21701-21750 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | * | 93.3986 | 91.2649 | 95.6344 | 83.1005 | 15202 | 1455 | 15203 | 694 | 360 | 51.8732 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | het | 93.3381 | 93.1962 | 93.4803 | 85.9836 | 9835 | 718 | 9836 | 686 | 353 | 51.4577 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7769 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | homalt | 93.5797 | 87.9486 | 99.9813 | 71.5146 | 5342 | 732 | 5342 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | * | 85.9747 | 92.0000 | 80.6901 | 88.9628 | 2047 | 178 | 2783 | 666 | 270 | 40.5405 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | het | 83.7912 | 96.0938 | 74.2812 | 90.3789 | 1353 | 55 | 1886 | 653 | 259 | 39.6631 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 48.8372 | 0.0000 | 0.0000 | 21 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | homalt | 92.3972 | 86.9509 | 98.5714 | 81.2719 | 673 | 101 | 897 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | * | 94.3667 | 92.4859 | 96.3257 | 81.1411 | 28272 | 2297 | 28287 | 1079 | 590 | 54.6803 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | het | 94.1854 | 93.9645 | 94.4074 | 84.4472 | 17935 | 1152 | 17961 | 1064 | 575 | 54.0414 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | hetalt | 84.6154 | 91.6667 | 78.5714 | 81.9355 | 22 | 2 | 22 | 6 | 6 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | homalt | 94.7112 | 90.0244 | 99.9127 | 68.9685 | 10315 | 1143 | 10304 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | * | 88.0989 | 95.5920 | 81.6951 | 88.4146 | 1106 | 51 | 1388 | 311 | 102 | 32.7974 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | het | 85.7424 | 98.1818 | 76.1006 | 89.7593 | 756 | 14 | 968 | 304 | 95 | 31.2500 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 10 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 94.7515 | 91.3978 | 98.3607 | 80.9715 | 340 | 32 | 420 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 98.9474 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 98.8281 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 22.2222 | 14.2857 | 50.0000 | 94.2857 | 4 | 24 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | het | 28.5714 | 20.0000 | 50.0000 | 93.9850 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | * | 22.9885 | 13.3333 | 83.3333 | 81.6327 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | het | 35.0877 | 22.2222 | 83.3333 | 81.2500 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | * | 90.4900 | 94.5977 | 86.7243 | 88.6844 | 823 | 47 | 1104 | 169 | 71 | 42.0118 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | het | 88.5797 | 98.8189 | 80.2632 | 90.8843 | 502 | 6 | 671 | 165 | 69 | 41.8182 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 42.1053 | 0.0000 | 0.0000 | 8 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | homalt | 95.0081 | 91.2536 | 99.0847 | 78.9803 | 313 | 30 | 433 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | * | 70.7555 | 70.3125 | 71.2042 | 85.5303 | 90 | 38 | 136 | 55 | 37 | 67.2727 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | het | 77.2841 | 88.7324 | 68.4524 | 86.1272 | 63 | 8 | 115 | 53 | 35 | 66.0377 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 55.0000 | 0.0000 | 0.0000 | 11 | 9 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | homalt | 58.6900 | 43.2432 | 91.3043 | 78.8991 | 16 | 21 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 44.5455 | 96.1417 | 0 | 0 | 49 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 37.7551 | 96.0863 | 0 | 0 | 37 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.5418 | 0 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||