PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21101-21150 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 93.6508 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 91.0112 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | * | 96.1909 | 95.7198 | 96.6667 | 99.1616 | 492 | 22 | 493 | 17 | 7 | 41.1765 | |
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | het | 95.7536 | 95.6012 | 95.9064 | 92.1703 | 326 | 15 | 328 | 14 | 4 | 28.5714 | |
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.9325 | 6 | 3 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | homalt | 97.8593 | 97.5610 | 98.1595 | 90.6751 | 160 | 4 | 160 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 90.4232 | 87.5000 | 93.5484 | 93.6214 | 28 | 4 | 29 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2267 | 95.0000 | 95.4545 | 93.3333 | 19 | 1 | 21 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 96.4286 | 2 | 3 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 93.7500 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | I6_15 | map_l150_m0_e0 | * | 54.5455 | 37.5000 | 100.0000 | 97.7612 | 3 | 5 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 98.1982 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 91.6667 | 1 | 3 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m0_e0 | * | 66.0468 | 49.3531 | 99.8062 | 82.1762 | 2060 | 2114 | 2060 | 4 | 1 | 25.0000 | |
| ckim-isaac | SNP | tv | map_l150_m0_e0 | het | 69.6130 | 53.4647 | 99.7375 | 84.2187 | 1520 | 1323 | 1520 | 4 | 1 | 25.0000 | |
| ckim-isaac | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | map_l150_m0_e0 | homalt | 57.8158 | 40.6627 | 100.0000 | 71.4889 | 540 | 788 | 540 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | * | 95.5110 | 97.2763 | 93.8086 | 94.9219 | 500 | 14 | 500 | 33 | 2 | 6.0606 | |
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | het | 93.8659 | 96.4809 | 91.3889 | 95.6752 | 329 | 12 | 329 | 31 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.4286 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m0_e0 | homalt | 99.0881 | 99.3902 | 98.7879 | 91.7376 | 163 | 1 | 163 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | * | 78.7671 | 65.3409 | 99.1379 | 93.2676 | 115 | 61 | 115 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | het | 84.7826 | 73.5849 | 100.0000 | 94.4681 | 78 | 28 | 78 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.0149 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | homalt | 67.9612 | 52.2388 | 97.2222 | 85.3659 | 35 | 32 | 35 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | * | 70.8651 | 54.9676 | 99.7000 | 80.5441 | 4321 | 3540 | 4321 | 13 | 3 | 23.0769 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | het | 74.1407 | 59.0347 | 99.6358 | 83.5333 | 3009 | 2088 | 3009 | 11 | 1 | 9.0909 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | ti | map_l150_m0_e0 | homalt | 64.3926 | 47.5190 | 99.8478 | 66.4710 | 1312 | 1449 | 1312 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | map_l150_m0_e0 | * | 69.2458 | 53.0336 | 99.7343 | 81.0939 | 6381 | 5651 | 6381 | 17 | 4 | 23.5294 | |
| ckim-isaac | SNP | * | map_l150_m0_e0 | het | 72.5569 | 57.0403 | 99.6699 | 83.7697 | 4529 | 3411 | 4529 | 15 | 2 | 13.3333 | |