PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20801-20850 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | map_l150_m0_e0 | homalt | 98.1502 | 96.6740 | 99.6722 | 79.8976 | 3953 | 136 | 3953 | 13 | 6 | 46.1538 | |
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | * | 96.1494 | 95.2932 | 97.0211 | 84.0052 | 7491 | 370 | 7491 | 230 | 86 | 37.3913 | |
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | het | 94.9778 | 94.4281 | 95.5339 | 85.9705 | 4813 | 284 | 4813 | 225 | 82 | 36.4444 | |
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 85.6041 | 167 | 9 | 166 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | het | 95.1456 | 92.4528 | 98.0000 | 84.0510 | 98 | 8 | 98 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3510 | 3 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2481 | 98.5075 | 100.0000 | 83.5476 | 66 | 1 | 64 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | * | 97.8455 | 95.9038 | 99.8675 | 65.1893 | 7539 | 322 | 7538 | 10 | 4 | 40.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | het | 96.9091 | 94.1142 | 99.8751 | 60.5146 | 4797 | 300 | 4797 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | homalt | 99.5276 | 99.2032 | 99.8541 | 71.1520 | 2739 | 22 | 2738 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 90.6158 | 32 | 0 | 32 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 90.1961 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.0635 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.5405 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 84.0000 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 75.0000 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | * | 97.7647 | 95.7862 | 99.8267 | 65.0696 | 11525 | 507 | 11521 | 20 | 4 | 20.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | het | 96.8156 | 94.0050 | 99.7994 | 59.7632 | 7464 | 476 | 7461 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | homalt | 99.5584 | 99.2419 | 99.8769 | 71.8698 | 4058 | 31 | 4057 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | * | 96.2737 | 93.7716 | 98.9130 | 83.8123 | 271 | 18 | 273 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | het | 95.9235 | 93.0693 | 98.9583 | 81.3230 | 188 | 14 | 190 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6111 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0060 | 95.2941 | 98.7805 | 84.6154 | 81 | 4 | 81 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | * | 97.6140 | 95.5678 | 99.7497 | 64.5964 | 3989 | 185 | 3986 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | het | 96.6478 | 93.8094 | 99.6633 | 58.3385 | 2667 | 176 | 2664 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | homalt | 99.6224 | 99.3223 | 99.9242 | 72.7891 | 1319 | 9 | 1319 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.1748 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 95.7447 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 4 | 0 | 4 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 94.4444 | 94.1176 | 94.7735 | 91.6932 | 272 | 17 | 272 | 15 | 6 | 40.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | het | 94.3489 | 95.0495 | 93.6585 | 92.6126 | 192 | 10 | 192 | 13 | 5 | 38.4615 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | homalt | 95.8084 | 94.1176 | 97.5610 | 87.9412 | 80 | 5 | 80 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | * | 92.9134 | 91.8288 | 94.0239 | 93.2052 | 472 | 42 | 472 | 30 | 20 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | het | 93.0233 | 93.8416 | 92.2190 | 93.9442 | 320 | 21 | 320 | 27 | 18 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||