PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20701-20750 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | * | 96.0765 | 95.1362 | 97.0356 | 91.6003 | 489 | 25 | 491 | 15 | 3 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | het | 94.9769 | 93.5484 | 96.4497 | 90.9601 | 319 | 22 | 326 | 12 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 97.4790 | 8 | 1 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 92.3823 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | * | 78.8060 | 68.7500 | 92.3077 | 91.5309 | 22 | 10 | 24 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | het | 77.1875 | 65.0000 | 95.0000 | 85.9155 | 13 | 7 | 19 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 80.0000 | 100.0000 | 4 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 96.2264 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | * | 94.8356 | 94.4731 | 95.2010 | 82.0124 | 11367 | 665 | 11367 | 573 | 270 | 47.1204 | |
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | het | 94.3991 | 95.4156 | 93.4040 | 78.0920 | 7576 | 364 | 7576 | 535 | 258 | 48.2243 | |
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | homalt | 95.7170 | 92.6388 | 99.0068 | 86.9094 | 3788 | 301 | 3788 | 38 | 12 | 31.5789 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | * | 94.5123 | 95.1557 | 93.8776 | 90.9427 | 275 | 14 | 276 | 18 | 5 | 27.7778 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | het | 93.3985 | 94.5545 | 92.2705 | 87.9230 | 191 | 11 | 191 | 16 | 3 | 18.7500 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3333 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0553 | 96.4706 | 97.6471 | 94.1661 | 82 | 3 | 83 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | * | 71.4286 | 62.5000 | 83.3333 | 92.2078 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 85.7143 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | * | 94.8381 | 94.0720 | 95.6168 | 81.0969 | 7395 | 466 | 7395 | 339 | 181 | 53.3923 | |
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | het | 94.2863 | 94.8597 | 93.7197 | 77.7514 | 4835 | 262 | 4835 | 324 | 174 | 53.7037 | |
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | homalt | 95.8935 | 92.6114 | 99.4168 | 85.4187 | 2557 | 204 | 2557 | 15 | 7 | 46.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | * | 93.2137 | 94.3182 | 92.1348 | 92.6899 | 166 | 10 | 164 | 14 | 4 | 28.5714 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | het | 90.7407 | 92.4528 | 89.0909 | 90.5902 | 98 | 8 | 98 | 12 | 2 | 16.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.5517 | 3 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | homalt | 97.7329 | 97.0149 | 98.4615 | 94.4869 | 65 | 2 | 64 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.2754 | 2 | 6 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | het | 40.0000 | 25.0000 | 100.0000 | 99.5349 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 97.5610 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | * | 85.7904 | 93.9689 | 78.9216 | 93.5231 | 483 | 31 | 483 | 129 | 24 | 18.6047 | |
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | het | 83.4371 | 98.2405 | 72.5108 | 94.3348 | 335 | 6 | 335 | 127 | 22 | 17.3228 | |
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | homalt | 94.2675 | 90.2439 | 98.6667 | 88.4080 | 148 | 16 | 148 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | * | 60.8696 | 43.7500 | 100.0000 | 97.6617 | 77 | 99 | 77 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | het | 64.9682 | 48.1132 | 100.0000 | 97.9260 | 51 | 55 | 51 | 0 | 0 | ||