PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20651-20700 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 94.8052 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.3662 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 99.0991 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 99.0566 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | * | 71.6418 | 75.0000 | 68.5714 | 94.8605 | 24 | 8 | 24 | 11 | 7 | 63.6364 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | het | 78.4314 | 100.0000 | 64.5161 | 94.8074 | 20 | 0 | 20 | 11 | 7 | 63.6364 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 95.2381 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 31.5789 | 96.9889 | 0 | 0 | 6 | 13 | 2 | 15.3846 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 13.3333 | 97.2727 | 0 | 0 | 2 | 13 | 2 | 15.3846 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.0617 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | * | 90.8072 | 93.7500 | 88.0435 | 93.4682 | 165 | 11 | 162 | 22 | 5 | 22.7273 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | het | 89.0022 | 96.2264 | 82.7869 | 94.8975 | 102 | 4 | 101 | 21 | 4 | 19.0476 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | homalt | 96.1591 | 94.0299 | 98.3871 | 85.4460 | 63 | 4 | 61 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | * | 50.0000 | 62.5000 | 41.6667 | 94.5701 | 5 | 3 | 5 | 7 | 3 | 42.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | het | 53.3333 | 100.0000 | 36.3636 | 94.5545 | 4 | 0 | 4 | 7 | 3 | 42.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | * | 87.6716 | 96.8858 | 80.0578 | 92.5399 | 280 | 9 | 277 | 69 | 7 | 10.1449 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | het | 85.0446 | 99.0099 | 74.5318 | 93.3133 | 200 | 2 | 199 | 68 | 6 | 8.8235 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | homalt | 96.3707 | 94.1176 | 98.7342 | 87.7519 | 80 | 5 | 78 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | * | 95.6512 | 99.5927 | 92.0098 | 83.3079 | 4157 | 17 | 4134 | 359 | 8 | 2.2284 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | het | 93.9083 | 99.6483 | 88.7937 | 84.1222 | 2833 | 10 | 2797 | 353 | 7 | 1.9830 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | hetalt | 98.0392 | 100.0000 | 96.1538 | 81.9444 | 3 | 0 | 25 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | homalt | 99.5466 | 99.4729 | 99.6203 | 81.0066 | 1321 | 7 | 1312 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | * | 98.7920 | 99.4784 | 98.1149 | 82.5537 | 7820 | 41 | 7703 | 148 | 7 | 4.7297 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | het | 98.2368 | 99.2937 | 97.2021 | 84.3948 | 5061 | 36 | 4968 | 143 | 4 | 2.7972 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.1726 | 3 | 0 | 43 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | homalt | 99.8168 | 99.8189 | 99.8146 | 77.6220 | 2756 | 5 | 2692 | 5 | 3 | 60.0000 | |
| gduggal-bwafb | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | * | 97.7007 | 99.5180 | 95.9486 | 82.7662 | 11974 | 58 | 11652 | 492 | 15 | 3.0488 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | het | 96.6790 | 99.4207 | 94.0844 | 84.2276 | 7894 | 46 | 7666 | 482 | 11 | 2.2822 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | hetalt | 98.9474 | 100.0000 | 97.9167 | 79.8319 | 3 | 0 | 47 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | homalt | 99.7393 | 99.7065 | 99.7720 | 78.7376 | 4077 | 12 | 3939 | 9 | 4 | 44.4444 | |