PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20601-20650 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | * | 92.1711 | 97.2989 | 87.5568 | 86.0626 | 11707 | 325 | 11568 | 1644 | 70 | 4.2579 | |
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | het | 89.4308 | 97.6574 | 82.4825 | 88.0388 | 7754 | 186 | 7675 | 1630 | 60 | 3.6810 | |
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | homalt | 98.1354 | 96.6740 | 99.6417 | 77.0204 | 3953 | 136 | 3893 | 14 | 10 | 71.4286 | |
| gduggal-snapfb | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | * | 91.9264 | 90.6615 | 93.2271 | 91.6942 | 466 | 48 | 468 | 34 | 11 | 32.3529 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | het | 90.4453 | 89.4428 | 91.4706 | 88.9359 | 305 | 36 | 311 | 29 | 6 | 20.6897 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | hetalt | 76.3636 | 77.7778 | 75.0000 | 96.9697 | 7 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | homalt | 95.6522 | 93.9024 | 97.4684 | 94.4347 | 154 | 10 | 154 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 94.1176 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | * | 98.2636 | 98.0635 | 98.4645 | 81.5621 | 11799 | 233 | 11799 | 184 | 58 | 31.5217 | |
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | het | 97.7971 | 97.8463 | 97.7479 | 82.8433 | 7769 | 171 | 7769 | 179 | 54 | 30.1676 | |
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l150_m0_e0 | homalt | 99.1750 | 98.4837 | 99.8760 | 78.3354 | 4027 | 62 | 4027 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | * | 93.9335 | 93.7500 | 94.1176 | 92.9752 | 30 | 2 | 32 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | het | 95.6438 | 95.0000 | 96.2963 | 89.8496 | 19 | 1 | 26 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 5 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 96.6019 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.8718 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.1429 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | * | 92.3077 | 85.7143 | 100.0000 | 93.2584 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | het | 92.3077 | 85.7143 | 100.0000 | 87.7551 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | * | 96.7298 | 97.2318 | 96.2329 | 91.2470 | 281 | 8 | 281 | 11 | 1 | 9.0909 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | het | 95.8231 | 96.5347 | 95.1220 | 90.2334 | 195 | 7 | 195 | 10 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 92.7039 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | * | 98.4686 | 98.1555 | 98.7838 | 81.2749 | 7716 | 145 | 7716 | 95 | 36 | 37.8947 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | het | 98.0450 | 97.9007 | 98.1897 | 82.8404 | 4990 | 107 | 4990 | 92 | 34 | 36.9565 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | homalt | 99.2528 | 98.6237 | 99.8899 | 77.4057 | 2723 | 38 | 2723 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 91.6584 | 167 | 9 | 166 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | het | 95.0980 | 91.5094 | 98.9796 | 92.1222 | 97 | 9 | 97 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0149 | 3 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 90.3272 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | * | 73.6842 | 100.0000 | 58.3333 | 95.6364 | 7 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | het | 73.6842 | 100.0000 | 58.3333 | 95.1417 | 7 | 0 | 7 | 5 | 0 | 0.0000 | |