PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20551-20600 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | * | 63.2075 | 46.3668 | 99.2593 | 97.4310 | 134 | 155 | 134 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | het | 64.2140 | 47.5248 | 98.9691 | 97.6861 | 96 | 106 | 96 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.5475 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | homalt | 60.6557 | 43.5294 | 100.0000 | 95.6057 | 37 | 48 | 37 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | * | 61.1860 | 44.1634 | 99.5614 | 97.6747 | 227 | 287 | 227 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | het | 63.2000 | 46.3343 | 99.3711 | 97.9552 | 158 | 183 | 158 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.1453 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | homalt | 57.3913 | 40.2439 | 100.0000 | 96.0667 | 66 | 98 | 66 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 98.4314 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 98.0952 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | * | 97.8800 | 97.8917 | 97.8683 | 82.0892 | 4086 | 88 | 4086 | 89 | 22 | 24.7191 | |
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | het | 97.3551 | 97.7489 | 96.9644 | 82.8486 | 2779 | 64 | 2779 | 87 | 20 | 22.9885 | |
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | homalt | 99.0129 | 98.1928 | 99.8469 | 80.0489 | 1304 | 24 | 1304 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | * | 47.6190 | 31.2500 | 100.0000 | 98.8221 | 10 | 22 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | het | 46.1538 | 30.0000 | 100.0000 | 99.1004 | 6 | 14 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 97.5309 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 98.0198 | 2 | 5 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | * | 90.7711 | 97.7240 | 84.7419 | 86.2817 | 4079 | 95 | 4071 | 733 | 21 | 2.8649 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | het | 87.7034 | 98.1358 | 79.2759 | 87.9471 | 2790 | 53 | 2781 | 727 | 17 | 2.3384 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | homalt | 98.2846 | 97.0633 | 99.5370 | 78.0859 | 1289 | 39 | 1290 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | * | 92.8160 | 97.0360 | 88.9477 | 85.9871 | 7628 | 233 | 7565 | 940 | 50 | 5.3192 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | het | 90.2624 | 97.3906 | 84.1064 | 88.1487 | 4964 | 133 | 4932 | 932 | 44 | 4.7210 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | homalt | 98.0657 | 96.4868 | 99.6971 | 76.4491 | 2664 | 97 | 2633 | 8 | 6 | 75.0000 | |