PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20501-20550 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.0833 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.4359 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.8904 | 3 | 1 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m0_e0 | * | 94.1997 | 95.5253 | 92.9104 | 91.8068 | 491 | 23 | 498 | 38 | 8 | 21.0526 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | het | 93.0816 | 95.6012 | 90.6915 | 92.2394 | 326 | 15 | 341 | 35 | 5 | 14.2857 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m0_e0 | homalt | 96.9136 | 95.7317 | 98.1250 | 90.5716 | 157 | 7 | 157 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7192 | 97.1591 | 98.2857 | 91.9982 | 171 | 5 | 172 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | het | 97.1200 | 95.2830 | 99.0291 | 93.2192 | 101 | 5 | 102 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.5572 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 55.5556 | 97.1787 | 0 | 0 | 5 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 42.8571 | 97.1660 | 0 | 0 | 3 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2222 | 0 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | * | 98.4884 | 99.1375 | 97.8477 | 81.2755 | 4138 | 36 | 4137 | 91 | 10 | 10.9890 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | het | 97.9977 | 99.0151 | 97.0010 | 83.2079 | 2815 | 28 | 2814 | 87 | 7 | 8.0460 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.5475 | 99.3976 | 99.6979 | 74.9100 | 1320 | 8 | 1320 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | * | 90.5945 | 89.6887 | 91.5187 | 98.1956 | 461 | 53 | 464 | 43 | 3 | 6.9767 | |
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | het | 88.4846 | 88.8563 | 88.1159 | 94.8291 | 303 | 38 | 304 | 41 | 2 | 4.8781 | |
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0739 | 9 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | homalt | 94.6072 | 90.8537 | 98.6842 | 92.1080 | 149 | 15 | 150 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | map_l150_m0_e0 | * | 93.7784 | 88.8356 | 99.3035 | 83.1642 | 3708 | 466 | 3707 | 26 | 6 | 23.0769 | |
| astatham-gatk | SNP | tv | map_l150_m0_e0 | het | 91.2506 | 84.5586 | 99.0928 | 85.6322 | 2404 | 439 | 2403 | 22 | 3 | 13.6364 | |
| astatham-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.2857 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m0_e0 | homalt | 98.8226 | 97.9669 | 99.6935 | 75.2231 | 1301 | 27 | 1301 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | map_l150_m0_e0 | * | 93.4108 | 88.0735 | 99.4368 | 82.7630 | 10597 | 1435 | 10594 | 60 | 21 | 35.0000 | |
| astatham-gatk | SNP | * | map_l150_m0_e0 | het | 90.3676 | 82.9471 | 99.2462 | 85.7275 | 6586 | 1354 | 6583 | 50 | 12 | 24.0000 | |
| astatham-gatk | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.2857 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l150_m0_e0 | homalt | 98.8775 | 98.0191 | 99.7511 | 73.7506 | 4008 | 81 | 4008 | 10 | 9 | 90.0000 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | * | 93.2170 | 87.6733 | 99.5090 | 82.5398 | 6892 | 969 | 6890 | 34 | 15 | 44.1176 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | het | 89.8677 | 82.0483 | 99.3346 | 85.7819 | 4182 | 915 | 4180 | 28 | 9 | 32.1429 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m0_e0 | homalt | 98.9039 | 98.0442 | 99.7788 | 72.9781 | 2707 | 54 | 2707 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 97.8261 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.1831 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |