PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20351-20400 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.4962 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.1660 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.5309 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.8904 | 3 | 1 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.8800 | 32 | 0 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.4128 | 20 | 0 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3846 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8905 | 7 | 0 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.7967 | 32 | 0 | 32 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.3271 | 20 | 0 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8905 | 7 | 0 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | * | 97.7917 | 99.3080 | 96.3211 | 91.7060 | 287 | 2 | 288 | 11 | 1 | 9.0909 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0991 | 99.0099 | 95.2607 | 91.9833 | 200 | 2 | 201 | 10 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7011 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.2935 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | * | 97.3095 | 98.2490 | 96.3878 | 92.6248 | 505 | 9 | 507 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | het | 96.6744 | 97.6540 | 95.7143 | 93.1170 | 333 | 8 | 335 | 15 | 1 | 6.6667 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4785 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 91.1359 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.7186 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 97.5806 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.5185 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 96.9799 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 96.0177 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||