PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19901-19950 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | * | 98.3535 | 97.3167 | 99.4126 | 77.2836 | 4062 | 112 | 4062 | 24 | 11 | 45.8333 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | het | 97.8428 | 96.5178 | 99.2046 | 78.4007 | 2744 | 99 | 2744 | 22 | 10 | 45.4545 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | homalt | 99.4329 | 99.0211 | 99.8481 | 74.3625 | 1315 | 13 | 1315 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.6183 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.5833 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | map_l150_m0_e0 | * | 98.6696 | 97.6466 | 99.7142 | 77.5024 | 7676 | 185 | 7676 | 22 | 11 | 50.0000 | |
| ndellapenna-hhga | SNP | ti | map_l150_m0_e0 | het | 98.1786 | 96.7628 | 99.6364 | 79.7339 | 4932 | 165 | 4932 | 18 | 7 | 38.8889 | |
| ndellapenna-hhga | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m0_e0 | homalt | 99.5641 | 99.2756 | 99.8543 | 71.8779 | 2741 | 20 | 2741 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 82.7722 | 73.3564 | 94.9612 | 95.8904 | 212 | 77 | 245 | 13 | 12 | 92.3077 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 83.9237 | 76.2376 | 93.3333 | 96.6468 | 154 | 48 | 168 | 12 | 11 | 91.6667 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.8653 | 67.0588 | 98.7179 | 91.2752 | 57 | 28 | 77 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 87.1795 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 84.0000 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 92.8571 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| raldana-dualsentieon | SNP | * | map_l150_m0_e0 | * | 98.5116 | 98.4791 | 98.5442 | 78.4632 | 11849 | 183 | 11846 | 175 | 7 | 4.0000 | |
| raldana-dualsentieon | SNP | * | map_l150_m0_e0 | het | 97.9798 | 98.0605 | 97.8994 | 80.7841 | 7786 | 154 | 7783 | 167 | 2 | 1.1976 | |
| raldana-dualsentieon | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m0_e0 | homalt | 99.5464 | 99.2908 | 99.8033 | 71.7833 | 4060 | 29 | 4060 | 8 | 5 | 62.5000 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | * | 98.4611 | 98.4989 | 98.4234 | 78.1788 | 7743 | 118 | 7741 | 124 | 5 | 4.0323 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | het | 97.9052 | 98.1362 | 97.6753 | 80.7049 | 5002 | 95 | 5000 | 119 | 1 | 0.8403 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | homalt | 99.4913 | 99.1670 | 99.8177 | 71.1111 | 2738 | 23 | 2738 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m0_e0 | * | 76.9231 | 62.5000 | 100.0000 | 95.9350 | 5 | 3 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.3333 | 2 | 2 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 93.0233 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | * | 97.5703 | 97.4708 | 97.6699 | 99.3659 | 501 | 13 | 503 | 12 | 4 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | het | 97.0666 | 96.7742 | 97.3607 | 91.5698 | 330 | 11 | 332 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | hetalt | 94.7368 | 100.0000 | 90.0000 | 96.1390 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | homalt | 98.7805 | 98.7805 | 98.7805 | 90.9940 | 162 | 2 | 162 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | * | 95.7635 | 96.0227 | 95.5056 | 89.8575 | 169 | 7 | 170 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 90.6598 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.7742 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 87.2624 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | * | 98.6080 | 98.4427 | 98.7737 | 78.9854 | 4109 | 65 | 4108 | 51 | 2 | 3.9216 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | het | 98.1142 | 97.9247 | 98.3045 | 80.9258 | 2784 | 59 | 2783 | 48 | 1 | 2.0833 | |