PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19851-19900 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1351 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | homalt | 98.7879 | 99.3902 | 98.1928 | 89.9819 | 163 | 1 | 163 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | * | 99.0843 | 98.9362 | 99.2329 | 79.6567 | 11904 | 128 | 11901 | 92 | 18 | 19.5652 | |
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | het | 98.8251 | 98.5390 | 99.1129 | 80.9036 | 7824 | 116 | 7821 | 70 | 11 | 15.7143 | |
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | homalt | 99.5848 | 99.7065 | 99.4633 | 76.6851 | 4077 | 12 | 4077 | 22 | 7 | 31.8182 | |
| gduggal-snapvard | SNP | ti | map_l150_m0_e0 | * | 89.0696 | 94.6444 | 84.1150 | 85.4263 | 7440 | 421 | 7371 | 1392 | 107 | 7.6868 | |
| gduggal-snapvard | SNP | ti | map_l150_m0_e0 | het | 85.6207 | 95.1933 | 77.7975 | 87.4036 | 4852 | 245 | 4818 | 1375 | 94 | 6.8364 | |
| gduggal-snapvard | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l150_m0_e0 | homalt | 96.4550 | 93.7342 | 99.3385 | 76.5596 | 2588 | 173 | 2553 | 17 | 13 | 76.4706 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | * | 87.3397 | 95.8793 | 80.1968 | 85.6633 | 4002 | 172 | 3993 | 986 | 44 | 4.4625 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | het | 83.5823 | 96.6936 | 73.6022 | 87.1311 | 2749 | 94 | 2738 | 982 | 41 | 4.1752 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | homalt | 96.9441 | 94.3524 | 99.6823 | 78.3751 | 1253 | 75 | 1255 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | * | 88.5661 | 95.0964 | 82.8750 | 85.4707 | 11442 | 590 | 11300 | 2335 | 147 | 6.2955 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | het | 85.0213 | 95.7305 | 76.4670 | 87.2666 | 7601 | 339 | 7519 | 2314 | 131 | 5.6612 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | homalt | 96.6127 | 93.9349 | 99.4477 | 77.1281 | 3841 | 248 | 3781 | 21 | 16 | 76.1905 | |
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | * | 61.5942 | 62.5000 | 60.7143 | 91.7889 | 5 | 3 | 17 | 11 | 8 | 72.7273 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | het | 74.4186 | 100.0000 | 59.2593 | 91.4013 | 4 | 0 | 16 | 11 | 8 | 72.7273 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 96.2963 | 1 | 3 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | * | 89.2989 | 94.1634 | 84.9123 | 96.4917 | 484 | 30 | 484 | 86 | 20 | 23.2558 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | het | 88.0637 | 97.3607 | 80.3874 | 95.1486 | 332 | 9 | 332 | 81 | 18 | 22.2222 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 94.7040 | 92.6829 | 96.8153 | 91.0541 | 152 | 12 | 152 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | * | 78.8292 | 68.8716 | 92.1529 | 96.4092 | 354 | 160 | 458 | 39 | 19 | 48.7179 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | het | 80.0048 | 71.5543 | 90.7186 | 97.0277 | 244 | 97 | 303 | 31 | 16 | 51.6129 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | hetalt | 66.6667 | 100.0000 | 6 | 3 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | map_l150_m0_e0 | homalt | 76.0880 | 63.4146 | 95.0920 | 93.4591 | 104 | 60 | 155 | 8 | 3 | 37.5000 | |
| qzeng-custom | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 60.0000 | 100.0000 | 42.8571 | 98.8553 | 7 | 0 | 6 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 71.4286 | 100.0000 | 55.5556 | 98.6861 | 7 | 0 | 5 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.0706 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |