PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19401-19450 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 96.0000 | 100.0000 | 92.3077 | 96.0486 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.0980 | 6 | 0 | 9 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6000 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 96.2025 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 95.0820 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 95.8402 | 96.9317 | 94.7730 | 87.3013 | 695 | 22 | 689 | 38 | 5 | 13.1579 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 94.9511 | 97.0954 | 92.8994 | 88.0198 | 468 | 14 | 471 | 36 | 3 | 8.3333 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.7738 | 96.4912 | 99.0909 | 85.2646 | 220 | 8 | 218 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 94.6958 | 94.5205 | 94.8718 | 90.3822 | 69 | 4 | 74 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 95.8628 | 97.4359 | 94.3396 | 91.6535 | 38 | 1 | 50 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 94.1176 | 92.3077 | 96.0000 | 85.7955 | 24 | 2 | 24 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 98.0769 | 0 | 11 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | SNP | * | map_l150_m1_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 80.0000 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | homalt | 86.3052 | 84.4052 | 88.2927 | 70.7708 | 9515 | 1758 | 9495 | 1259 | 1014 | 80.5401 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | * | 78.8472 | 74.5840 | 83.6274 | 80.0382 | 14702 | 5010 | 14695 | 2877 | 739 | 25.6865 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | het | 73.8384 | 68.2296 | 80.4520 | 83.6682 | 8440 | 3930 | 8437 | 2050 | 62 | 3.0244 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | hetalt | 74.0741 | 66.6667 | 83.3333 | 73.3333 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | homalt | 86.8060 | 85.3282 | 88.3359 | 70.2453 | 6252 | 1075 | 6248 | 825 | 675 | 81.8182 | |
| ciseli-custom | SNP | tv | map_l150_m1_e0 | * | 76.2235 | 70.9861 | 82.2954 | 80.7468 | 7746 | 3166 | 7744 | 1666 | 387 | 23.2293 | |
| ciseli-custom | SNP | tv | map_l150_m1_e0 | het | 70.7269 | 64.3680 | 78.4799 | 84.0134 | 4471 | 2475 | 4471 | 1226 | 46 | 3.7520 | |
| ciseli-custom | SNP | tv | map_l150_m1_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 80.0000 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | tv | map_l150_m1_e0 | homalt | 85.3488 | 82.6913 | 88.1828 | 71.9082 | 3263 | 683 | 3261 | 437 | 339 | 77.5744 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | * | 96.2243 | 96.2631 | 96.1855 | 90.5619 | 1288 | 50 | 1286 | 51 | 9 | 17.6471 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | het | 95.1716 | 95.6725 | 94.6759 | 91.3591 | 818 | 37 | 818 | 46 | 5 | 10.8696 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.9555 | 17 | 4 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m1_e0 | homalt | 98.4759 | 98.0519 | 98.9035 | 88.0940 | 453 | 9 | 451 | 5 | 4 | 80.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.3856 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 33.3333 | 20.0000 | 100.0000 | 97.1429 | 3 | 12 | 3 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 97.9167 | 0 | 7 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | SNP | * | map_l150_m1_e0 | * | 77.9234 | 73.3052 | 83.1626 | 80.2472 | 22438 | 8171 | 22404 | 4536 | 1124 | 24.7795 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | het | 72.7287 | 66.8410 | 79.7539 | 83.7508 | 12911 | 6405 | 12897 | 3274 | 108 | 3.2987 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 55.9441 | 54.7945 | 57.1429 | 94.0171 | 40 | 33 | 40 | 30 | 13 | 43.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 51.9481 | 51.2821 | 52.6316 | 95.3827 | 20 | 19 | 20 | 18 | 3 | 16.6667 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 68.9655 | 76.9231 | 62.5000 | 90.7781 | 20 | 6 | 20 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 55.6515 | 48.6166 | 65.0667 | 91.6126 | 246 | 260 | 244 | 131 | 111 | 84.7328 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | het | 62.5043 | 64.2140 | 60.8833 | 91.5127 | 192 | 107 | 193 | 124 | 107 | 86.2903 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 11.1111 | 0.0000 | 0.0000 | 1 | 8 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 41.0416 | 26.7677 | 87.9310 | 92.1196 | 53 | 145 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 51.7241 | 45.4545 | 60.0000 | 94.3966 | 80 | 96 | 78 | 52 | 39 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 59.3607 | 61.3208 | 57.5221 | 94.3500 | 65 | 41 | 65 | 48 | 38 | 79.1667 | |