PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19151-19200 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | hetalt | 62.0690 | 45.0000 | 100.0000 | 94.3396 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | homalt | 58.4217 | 41.2756 | 99.9355 | 84.5500 | 4653 | 6620 | 4649 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | * | 68.9590 | 52.8054 | 99.3512 | 89.9469 | 10409 | 9303 | 10413 | 68 | 24 | 35.2941 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | het | 74.1845 | 59.2724 | 99.1222 | 91.2737 | 7332 | 5038 | 7340 | 65 | 21 | 32.3077 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | hetalt | 63.6364 | 46.6667 | 100.0000 | 92.4731 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | homalt | 59.0384 | 41.8998 | 99.9022 | 84.1026 | 3070 | 4257 | 3066 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | * | 30.7692 | 18.1818 | 100.0000 | 97.8947 | 2 | 9 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.6667 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.7500 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | * | 68.4211 | 52.0000 | 100.0000 | 97.5881 | 13 | 12 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | het | 63.6364 | 46.6667 | 100.0000 | 98.2368 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 96.7391 | 3 | 4 | 3 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | * | 99.1809 | 99.6144 | 98.7511 | 77.4196 | 19636 | 76 | 19293 | 244 | 16 | 6.5574 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | het | 98.7761 | 99.4907 | 98.0716 | 79.3788 | 12307 | 63 | 12053 | 237 | 11 | 4.6414 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.8157 | 15 | 0 | 104 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | homalt | 99.8623 | 99.8226 | 99.9020 | 73.1001 | 7314 | 13 | 7136 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | * | 96.3775 | 95.2915 | 97.4886 | 88.7239 | 1275 | 63 | 1281 | 33 | 7 | 21.2121 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | het | 95.6334 | 94.2690 | 97.0379 | 88.0521 | 806 | 49 | 819 | 25 | 1 | 4.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | hetalt | 86.4865 | 76.1905 | 100.0000 | 96.5116 | 16 | 5 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | homalt | 98.1582 | 98.0519 | 98.2646 | 89.3558 | 453 | 9 | 453 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | * | 98.5692 | 99.6472 | 97.5143 | 77.5222 | 30501 | 108 | 29619 | 755 | 30 | 3.9735 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | het | 97.8416 | 99.5651 | 96.1767 | 79.2991 | 19232 | 84 | 18640 | 741 | 22 | 2.9690 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | hetalt | 99.5781 | 100.0000 | 99.1597 | 73.6142 | 20 | 0 | 118 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | homalt | 99.8338 | 99.7871 | 99.8804 | 73.5129 | 11249 | 24 | 10861 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | * | 97.4561 | 99.7067 | 95.3048 | 77.8264 | 10880 | 32 | 10819 | 533 | 14 | 2.6266 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | het | 96.1715 | 99.6977 | 92.8862 | 79.2854 | 6925 | 21 | 6855 | 525 | 11 | 2.0952 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | hetalt | 99.2248 | 100.0000 | 98.4615 | 76.1905 | 20 | 0 | 64 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | homalt | 99.7710 | 99.7212 | 99.8208 | 74.4574 | 3935 | 11 | 3900 | 7 | 3 | 42.8571 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | * | 70.4293 | 54.5590 | 99.3197 | 95.9257 | 730 | 608 | 730 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | het | 73.6223 | 58.5965 | 99.0119 | 96.3513 | 501 | 354 | 501 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | hetalt | 64.5161 | 47.6190 | 100.0000 | 98.4615 | 10 | 11 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | homalt | 64.3172 | 47.4026 | 100.0000 | 93.7819 | 219 | 243 | 219 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||