PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19051-19100 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 90.9091 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m1_e0 | * | 93.8317 | 95.4545 | 92.2631 | 90.7131 | 483 | 23 | 477 | 40 | 14 | 35.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m1_e0 | het | 93.2578 | 98.3278 | 88.6850 | 92.8163 | 294 | 5 | 290 | 37 | 13 | 35.1351 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m1_e0 | homalt | 96.9151 | 95.4545 | 98.4211 | 81.2808 | 189 | 9 | 187 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | * | 69.0909 | 76.0000 | 63.3333 | 93.1350 | 19 | 6 | 19 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 93.7028 | 15 | 0 | 15 | 10 | 4 | 40.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | * | 91.1702 | 96.9317 | 86.0553 | 90.3175 | 695 | 22 | 685 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | het | 89.0608 | 98.7552 | 81.0997 | 91.6235 | 476 | 6 | 472 | 110 | 12 | 10.9091 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.5340 | 95.6140 | 99.5327 | 83.1893 | 218 | 10 | 213 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 44.1860 | 96.2511 | 0 | 0 | 19 | 24 | 3 | 12.5000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 35.1351 | 96.3330 | 0 | 0 | 13 | 24 | 3 | 12.5000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.6522 | 0 | 0 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 74.2857 | 86.6667 | 65.0000 | 95.8932 | 13 | 2 | 13 | 7 | 2 | 28.5714 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | het | 78.7879 | 92.8571 | 68.4211 | 95.6322 | 13 | 1 | 13 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.0769 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | * | 95.2687 | 97.5497 | 93.0920 | 81.8831 | 19229 | 483 | 19055 | 1414 | 91 | 6.4356 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | het | 93.4529 | 97.7284 | 89.5358 | 84.8427 | 12089 | 281 | 11996 | 1402 | 82 | 5.8488 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | homalt | 98.6247 | 97.4478 | 99.8303 | 71.2444 | 7140 | 187 | 7059 | 12 | 9 | 75.0000 | |
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | * | 93.3899 | 92.3019 | 94.5038 | 89.1529 | 1235 | 103 | 1238 | 72 | 21 | 29.1667 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | het | 92.2591 | 91.5789 | 92.9495 | 86.7487 | 783 | 72 | 791 | 60 | 12 | 20.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 96.6102 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | homalt | 96.1581 | 94.8052 | 97.5501 | 91.6231 | 438 | 24 | 438 | 11 | 8 | 72.7273 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | homalt | 66.6667 | 57.1429 | 80.0000 | 87.5000 | 4 | 3 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | * | 94.8478 | 97.7523 | 92.1110 | 81.9172 | 29921 | 688 | 29540 | 2530 | 139 | 5.4941 | |
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | het | 92.8051 | 97.9602 | 88.1654 | 84.8061 | 18922 | 394 | 18699 | 2510 | 124 | 4.9402 | |
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | homalt | 98.6799 | 97.5694 | 99.8159 | 71.2383 | 10999 | 274 | 10841 | 20 | 15 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | * | 93.9183 | 97.9839 | 90.1767 | 82.0762 | 10692 | 220 | 10667 | 1162 | 50 | 4.3029 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | het | 91.4999 | 98.3732 | 85.5243 | 84.8383 | 6833 | 113 | 6818 | 1154 | 44 | 3.8128 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | homalt | 98.7838 | 97.7952 | 99.7926 | 71.2507 | 3859 | 87 | 3849 | 8 | 6 | 75.0000 | |