PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18401-18450 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | * | 84.8485 | 93.3333 | 77.7778 | 98.6686 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.9429 | 14 | 0 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.9444 | 80.8219 | 83.0986 | 93.6036 | 59 | 14 | 59 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | het | 86.6667 | 100.0000 | 76.4706 | 94.7639 | 39 | 0 | 39 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | homalt | 86.9565 | 76.9231 | 100.0000 | 85.2941 | 20 | 6 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | * | 97.5871 | 96.6368 | 98.5562 | 87.8193 | 1293 | 45 | 1297 | 19 | 4 | 21.0526 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | het | 96.9158 | 95.4386 | 98.4394 | 87.9118 | 816 | 39 | 820 | 13 | 1 | 7.6923 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9495 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | homalt | 98.8108 | 98.9177 | 98.7041 | 86.8354 | 457 | 5 | 457 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 90.9091 | 100.0000 | 83.3333 | 94.8571 | 15 | 0 | 15 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 93.4959 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.7179 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8825 | 96.6527 | 99.1441 | 85.9378 | 693 | 24 | 695 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3679 | 95.8506 | 98.9339 | 85.2423 | 462 | 20 | 464 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3913 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 85.6690 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | * | 96.9968 | 98.4146 | 95.6193 | 80.2097 | 10739 | 173 | 10739 | 492 | 89 | 18.0894 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | het | 96.2185 | 98.9058 | 93.6733 | 82.5202 | 6870 | 76 | 6870 | 464 | 74 | 15.9483 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | homalt | 98.6612 | 98.0487 | 99.2815 | 73.6565 | 3869 | 77 | 3869 | 28 | 15 | 53.5714 | |
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.0147 | 97.4308 | 98.6056 | 88.2104 | 493 | 13 | 495 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.1183 | 95.6522 | 98.6301 | 89.0019 | 286 | 13 | 288 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 85.7548 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | * | 99.3490 | 99.1071 | 99.5921 | 73.5929 | 19536 | 176 | 19532 | 80 | 23 | 28.7500 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | het | 99.0951 | 98.7227 | 99.4704 | 74.9167 | 12212 | 158 | 12208 | 65 | 17 | 26.1538 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.5625 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | homalt | 99.7748 | 99.7543 | 99.7952 | 71.0227 | 7309 | 18 | 7309 | 15 | 6 | 40.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | * | 99.3066 | 99.0927 | 99.5213 | 73.8197 | 10813 | 99 | 10811 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | het | 99.0753 | 98.7331 | 99.4200 | 74.8128 | 6858 | 88 | 6856 | 40 | 10 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | homalt | 99.7086 | 99.7212 | 99.6960 | 71.8212 | 3935 | 11 | 3935 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | * | 97.9254 | 98.5800 | 97.2794 | 89.7079 | 1319 | 19 | 1323 | 37 | 6 | 16.2162 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | het | 97.3465 | 98.3626 | 96.3512 | 90.4715 | 841 | 14 | 845 | 32 | 3 | 9.3750 | |