PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17601-17650 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3636 | 98.2659 | 98.4615 | 88.9078 | 510 | 9 | 512 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | het | 97.7251 | 97.0874 | 98.3713 | 89.5400 | 300 | 9 | 302 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6731 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 86.7961 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.7965 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 94.6541 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 90.8989 | 81 | 1 | 81 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.0690 | 46 | 0 | 46 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.2088 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 87.6712 | 27 | 1 | 27 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.2025 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.2703 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.3856 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.6930 | 98.8204 | 98.5658 | 87.1803 | 754 | 9 | 756 | 11 | 3 | 27.2727 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.5517 | 99.0272 | 98.0806 | 87.1263 | 509 | 5 | 511 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4138 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 85.9155 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 86.4865 | 94.1176 | 80.0000 | 97.4843 | 16 | 1 | 16 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 97.1061 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.3007 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 92.9788 | 98.6894 | 87.8929 | 91.6415 | 753 | 10 | 755 | 104 | 4 | 3.8462 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 90.3609 | 99.0272 | 83.0894 | 92.4149 | 509 | 5 | 511 | 104 | 4 | 3.8462 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.7612 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1667 | 98.3471 | 100.0000 | 87.4803 | 238 | 4 | 238 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | * | 99.3876 | 99.3395 | 99.4357 | 75.5855 | 11280 | 75 | 11278 | 64 | 9 | 14.0625 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | het | 99.2203 | 99.1589 | 99.2819 | 76.4022 | 7191 | 61 | 7189 | 52 | 5 | 9.6154 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | homalt | 99.6815 | 99.6571 | 99.7060 | 73.9183 | 4069 | 14 | 4069 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | * | map_l150_m2_e0 | * | 93.7096 | 98.1534 | 89.6507 | 92.6142 | 1382 | 26 | 1386 | 160 | 9 | 5.6250 | |
| jlack-gatk | INDEL | * | map_l150_m2_e0 | het | 91.3052 | 98.1236 | 85.3728 | 93.4833 | 889 | 17 | 893 | 153 | 6 | 3.9216 | |
| jlack-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.6829 | 90.4762 | 95.0000 | 95.8506 | 19 | 2 | 19 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l150_m2_e0 | homalt | 98.6472 | 98.5447 | 98.7500 | 89.0884 | 474 | 7 | 474 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||