PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17401-17450 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | ti | map_l150_m2_e0 | * | 99.2366 | 99.1907 | 99.2825 | 78.2548 | 20346 | 166 | 20342 | 147 | 36 | 24.4898 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e0 | het | 99.0461 | 99.1693 | 98.9232 | 81.0415 | 12774 | 107 | 12770 | 139 | 30 | 21.5827 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5763 | 15 | 0 | 15 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.5587 | 99.2253 | 99.8942 | 70.9853 | 7557 | 59 | 7557 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | * | 99.0452 | 99.1281 | 98.9624 | 78.7121 | 11256 | 99 | 11254 | 118 | 24 | 20.3390 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | het | 98.8320 | 99.2002 | 98.4666 | 81.2986 | 7194 | 58 | 7192 | 112 | 20 | 17.8571 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | homalt | 99.4343 | 99.0203 | 99.8518 | 71.6158 | 4043 | 40 | 4043 | 6 | 4 | 66.6667 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.8855 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.9064 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.5517 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 98.3008 | 98.4273 | 98.1747 | 90.2973 | 751 | 12 | 753 | 14 | 3 | 21.4286 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0706 | 98.6381 | 97.5096 | 90.6250 | 507 | 7 | 509 | 13 | 2 | 15.3846 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.6562 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9605 | 98.3471 | 99.5816 | 88.5151 | 238 | 4 | 238 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 97.1564 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.8037 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.8947 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 98.4582 | 98.2659 | 98.6513 | 90.9250 | 510 | 9 | 512 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 98.0498 | 97.4110 | 98.6971 | 91.7517 | 301 | 8 | 303 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9459 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.5634 | 200 | 1 | 200 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1595 | 97.5610 | 98.7654 | 93.1414 | 80 | 2 | 80 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 98.9247 | 100.0000 | 97.8723 | 94.2260 | 46 | 0 | 46 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.2963 | 92.8571 | 100.0000 | 90.2622 | 26 | 2 | 26 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6891 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.4074 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.7368 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3957 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | * | 96.5943 | 95.5684 | 97.6424 | 93.2903 | 496 | 23 | 497 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | het | 94.7249 | 92.8803 | 96.6443 | 94.6326 | 287 | 22 | 288 | 10 | 1 | 10.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8140 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2556 | 99.5025 | 99.0099 | 88.8950 | 200 | 1 | 200 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | * | 95.8333 | 92.0000 | 100.0000 | 96.7422 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | het | 96.5517 | 93.3333 | 100.0000 | 97.0833 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.7213 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | * | 96.9697 | 97.5610 | 96.3855 | 94.3422 | 80 | 2 | 80 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | het | 95.7447 | 97.8261 | 93.7500 | 95.5514 | 45 | 1 | 45 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7928 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.2527 | 27 | 1 | 27 | 0 | 0 | ||
| ckim-vqsr | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.8604 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 97.5362 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |