PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17251-17300 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | homalt | 99.7670 | 99.6081 | 99.9263 | 73.5886 | 4067 | 16 | 4067 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 89.2308 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.4545 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | * | 91.3043 | 84.0000 | 100.0000 | 94.5312 | 21 | 4 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 94.9772 | 11 | 4 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e0 | * | 99.3568 | 98.9326 | 99.7847 | 74.8691 | 31512 | 340 | 31512 | 68 | 32 | 47.0588 | |
| egarrison-hhga | SNP | * | map_l150_m2_e0 | het | 99.1156 | 98.5298 | 99.7085 | 75.6800 | 19837 | 296 | 19837 | 58 | 22 | 37.9310 | |
| egarrison-hhga | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e0 | homalt | 99.7775 | 99.6410 | 99.9143 | 73.3265 | 11657 | 42 | 11657 | 10 | 10 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l150_m2_e0 | * | 99.3881 | 98.9811 | 99.7985 | 75.2011 | 20303 | 209 | 20303 | 41 | 20 | 48.7805 | |
| egarrison-hhga | SNP | ti | map_l150_m2_e0 | het | 99.1606 | 98.5948 | 99.7330 | 76.2545 | 12700 | 181 | 12700 | 34 | 13 | 38.2353 | |
| egarrison-hhga | SNP | ti | map_l150_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 83.5443 | 13 | 2 | 13 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l150_m2_e0 | homalt | 99.7831 | 99.6586 | 99.9079 | 73.1839 | 7590 | 26 | 7590 | 7 | 7 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3638 | 98.4586 | 98.2692 | 90.4535 | 511 | 8 | 511 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | het | 98.2172 | 98.0583 | 98.3766 | 90.6808 | 303 | 6 | 303 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3710 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.5149 | 99.0050 | 98.0296 | 89.2819 | 199 | 2 | 199 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 78.7879 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 77.7778 | 2 | 4 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6695 | 97.3025 | 98.0392 | 88.0317 | 505 | 14 | 800 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0183 | 96.4401 | 97.6035 | 87.5509 | 298 | 11 | 448 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.2748 | 7 | 2 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0179 | 99.5025 | 98.5380 | 88.0795 | 200 | 1 | 337 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | * | 77.4055 | 68.0000 | 89.8305 | 85.8852 | 17 | 8 | 53 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | het | 70.0000 | 60.0000 | 84.0000 | 87.9808 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 76.7442 | 2 | 1 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | homalt | 88.5906 | 85.7143 | 91.6667 | 85.6287 | 6 | 1 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | * | 88.3436 | 87.8049 | 88.8889 | 89.8462 | 72 | 10 | 88 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | het | 95.1374 | 97.8261 | 92.5926 | 88.8430 | 45 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 89.4118 | 4 | 4 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | homalt | 81.3415 | 82.1429 | 80.5556 | 91.1330 | 23 | 5 | 29 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 92.5926 | 97.2644 | 0 | 0 | 25 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.7143 | 0 | 0 | 10 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.2000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8457 | 0 | 0 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | * | 85.1927 | 82.3529 | 88.2353 | 90.6593 | 14 | 3 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.3226 | 87.5000 | 93.3333 | 85.7143 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.4848 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8351 | 98.0341 | 97.6369 | 88.8302 | 748 | 15 | 909 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | het | 98.0741 | 98.6381 | 97.5166 | 87.5310 | 507 | 7 | 589 | 15 | 5 | 33.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.9789 | 4 | 3 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.8628 | 97.9339 | 97.7918 | 89.9684 | 237 | 5 | 310 | 7 | 7 | 100.0000 | |