PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17201-17250 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e0 | * | 81.0811 | 88.2353 | 75.0000 | 97.9079 | 15 | 2 | 15 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e0 | het | 83.3333 | 93.7500 | 75.0000 | 97.2752 | 15 | 1 | 15 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 61.5385 | 47.0588 | 88.8889 | 95.9641 | 8 | 9 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.4426 | 8 | 8 | 8 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.0099 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 74.1130 | 68.8073 | 80.3053 | 92.8974 | 525 | 238 | 526 | 129 | 61 | 47.2868 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 72.4320 | 65.5642 | 80.9069 | 93.9773 | 337 | 177 | 339 | 80 | 21 | 26.2500 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | homalt | 78.2427 | 77.2727 | 79.2373 | 89.5806 | 187 | 55 | 187 | 49 | 40 | 81.6327 | |
| ciseli-custom | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | map_l150_m2_e0 | * | 96.8497 | 96.6995 | 97.0004 | 78.4535 | 19835 | 677 | 19823 | 613 | 163 | 26.5905 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | het | 96.0807 | 96.8481 | 95.3254 | 81.6490 | 12475 | 406 | 12480 | 612 | 162 | 26.4706 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m2_e0 | homalt | 98.1821 | 96.4417 | 99.9864 | 68.7543 | 7345 | 271 | 7343 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | * | 65.2883 | 59.0199 | 73.0465 | 93.1719 | 831 | 577 | 832 | 307 | 191 | 62.2150 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | het | 66.9093 | 62.8035 | 71.5895 | 93.6451 | 569 | 337 | 572 | 227 | 132 | 58.1498 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 1 | 20 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l150_m2_e0 | homalt | 63.4799 | 54.2620 | 76.4706 | 91.7215 | 261 | 220 | 260 | 80 | 59 | 73.7500 | |
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 10.0000 | 98.2699 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 99.1189 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 12.5000 | 97.7208 | 0 | 0 | 1 | 7 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | * | 96.3013 | 97.0233 | 95.5899 | 79.4079 | 11017 | 338 | 11011 | 508 | 83 | 16.3386 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | het | 95.1992 | 97.1870 | 93.2911 | 82.3459 | 7048 | 204 | 7064 | 508 | 83 | 16.3386 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e0 | homalt | 98.3317 | 96.7181 | 100.0000 | 69.7502 | 3949 | 134 | 3947 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | * | 96.5842 | 96.1648 | 97.0072 | 95.5563 | 1354 | 54 | 1880 | 58 | 41 | 70.6897 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | het | 96.7930 | 96.5784 | 97.0085 | 88.1973 | 875 | 31 | 1135 | 35 | 18 | 51.4286 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 95.4210 | 12 | 9 | 31 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | homalt | 96.9842 | 97.0894 | 96.8792 | 89.5683 | 467 | 14 | 714 | 23 | 23 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | * | 99.2922 | 98.8287 | 99.7600 | 74.2574 | 11222 | 133 | 11222 | 27 | 12 | 44.4444 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | het | 99.0356 | 98.4142 | 99.6649 | 74.5802 | 7137 | 115 | 7137 | 24 | 9 | 37.5000 | |