PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17151-17200 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | map_l150_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 95.6410 | 17 | 4 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m2_e0 | homalt | 98.5364 | 98.1289 | 98.9474 | 89.1453 | 472 | 9 | 470 | 5 | 4 | 80.0000 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | * | 78.3493 | 73.8101 | 83.4833 | 81.5713 | 23510 | 8342 | 23473 | 4644 | 1150 | 24.7631 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | het | 73.2869 | 67.4862 | 80.1784 | 84.7273 | 13587 | 6546 | 13571 | 3355 | 112 | 3.3383 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.5581 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | homalt | 86.5638 | 84.7166 | 88.4932 | 73.1740 | 9911 | 1788 | 9890 | 1286 | 1036 | 80.5599 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | * | 79.2695 | 75.0926 | 83.9385 | 81.3448 | 15403 | 5109 | 15396 | 2946 | 753 | 25.5601 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | het | 74.3678 | 68.8533 | 80.8425 | 84.6368 | 8869 | 4012 | 8866 | 2101 | 62 | 2.9510 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | hetalt | 74.0741 | 66.6667 | 83.3333 | 76.9231 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | homalt | 87.0824 | 85.6618 | 88.5509 | 72.6120 | 6524 | 1092 | 6520 | 843 | 689 | 81.7319 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 54.0881 | 52.4390 | 55.8442 | 94.0769 | 43 | 39 | 43 | 34 | 16 | 47.0588 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 50.0000 | 47.8261 | 52.3810 | 95.3998 | 22 | 24 | 22 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 66.6667 | 75.0000 | 60.0000 | 90.9561 | 21 | 7 | 21 | 14 | 12 | 85.7143 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 55.9084 | 48.7476 | 65.5352 | 92.4128 | 253 | 266 | 251 | 132 | 111 | 84.0909 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 62.9373 | 64.4013 | 61.5385 | 92.2212 | 199 | 110 | 200 | 125 | 107 | 85.6000 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 11.1111 | 0.0000 | 0.0000 | 1 | 8 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 40.5704 | 26.3682 | 87.9310 | 93.3333 | 53 | 148 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.8022 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 97.5806 | 3 | 12 | 3 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.2759 | 0 | 7 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 98.2456 | 0 | 11 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 94.4444 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | * | 96.9325 | 96.3415 | 97.5309 | 93.1646 | 79 | 3 | 79 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.8303 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.2963 | 92.8571 | 100.0000 | 92.1687 | 26 | 2 | 26 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 95.7198 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.1749 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8276 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | * | 95.5340 | 94.7977 | 96.2818 | 90.8259 | 492 | 27 | 492 | 19 | 5 | 26.3158 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | het | 93.7785 | 92.5566 | 95.0331 | 91.9659 | 286 | 23 | 287 | 15 | 2 | 13.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.7672 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.2581 | 98.5075 | 98.0100 | 87.6079 | 198 | 3 | 197 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | * | 96.9967 | 97.5098 | 96.4889 | 90.2658 | 744 | 19 | 742 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | het | 96.3484 | 97.6654 | 95.0664 | 90.7186 | 502 | 12 | 501 | 26 | 2 | 7.6923 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.1982 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9596 | 98.3471 | 99.5798 | 88.1000 | 238 | 4 | 237 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||