PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16851-16900 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.8571 | 6 | 2 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 80.0000 | 71.4286 | 90.9091 | 92.0000 | 20 | 8 | 20 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | * | 95.3887 | 95.7611 | 95.0192 | 91.2077 | 497 | 22 | 496 | 26 | 7 | 26.9231 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | het | 93.8813 | 94.1748 | 93.5897 | 89.6242 | 291 | 18 | 292 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 88.1890 | 88.8889 | 87.5000 | 96.5217 | 8 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.0136 | 98.5075 | 97.5248 | 92.5185 | 198 | 3 | 197 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | * | 95.5016 | 96.0682 | 94.9416 | 89.0312 | 733 | 30 | 732 | 39 | 8 | 20.5128 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | het | 94.7138 | 96.1089 | 93.3586 | 86.7121 | 494 | 20 | 492 | 35 | 5 | 14.2857 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.8947 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.7165 | 97.1074 | 98.3333 | 91.6464 | 235 | 7 | 236 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 63.6364 | 70.0000 | 93.5065 | 7 | 4 | 7 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | het | 80.0000 | 100.0000 | 66.6667 | 93.6170 | 6 | 0 | 6 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 92.3077 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | * | 93.9848 | 95.5684 | 92.4528 | 91.6272 | 496 | 23 | 490 | 40 | 14 | 35.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | het | 93.4675 | 98.3819 | 89.0208 | 93.4867 | 304 | 5 | 300 | 37 | 13 | 35.1351 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | homalt | 96.9620 | 95.5224 | 98.4456 | 83.3045 | 192 | 9 | 190 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | * | 82.8213 | 82.9268 | 82.7160 | 93.4835 | 68 | 14 | 67 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | het | 86.7925 | 100.0000 | 76.6667 | 94.4954 | 46 | 0 | 46 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.0000 | 78.5714 | 100.0000 | 86.2745 | 22 | 6 | 21 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 41.3043 | 96.3434 | 0 | 0 | 19 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 32.5000 | 96.4093 | 0 | 0 | 13 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 75.0000 | 88.2353 | 65.2174 | 95.9147 | 15 | 2 | 15 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 78.9474 | 93.7500 | 68.1818 | 95.6607 | 15 | 1 | 15 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.2143 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | * | 91.6113 | 96.9856 | 86.8014 | 90.8198 | 740 | 23 | 730 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | het | 89.5859 | 98.6381 | 82.0555 | 92.0606 | 507 | 7 | 503 | 110 | 12 | 10.9091 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.6797 | 95.8678 | 99.5614 | 84.1667 | 232 | 10 | 227 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 33.3333 | 98.4536 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 98.8950 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||