PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16801-16850 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | * | 69.0909 | 76.0000 | 63.3333 | 94.0358 | 19 | 6 | 19 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 94.4812 | 15 | 0 | 15 | 10 | 4 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | homalt | 66.6667 | 57.1429 | 80.0000 | 90.0000 | 4 | 3 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | * | 94.9737 | 97.7584 | 92.3433 | 83.0785 | 31138 | 714 | 30742 | 2549 | 141 | 5.5316 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | het | 93.0021 | 97.9685 | 88.5150 | 85.7521 | 19724 | 409 | 19491 | 2529 | 126 | 4.9822 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | homalt | 98.6803 | 97.5639 | 99.8226 | 73.2845 | 11414 | 285 | 11251 | 20 | 15 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | * | 94.0699 | 97.9833 | 90.4572 | 83.2501 | 11126 | 229 | 11100 | 1171 | 50 | 4.2699 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | het | 91.7382 | 98.3591 | 85.9524 | 85.7991 | 7133 | 119 | 7116 | 1163 | 44 | 3.7833 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | homalt | 98.7875 | 97.7957 | 99.7996 | 73.3173 | 3993 | 90 | 3984 | 8 | 6 | 75.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | * | 93.6073 | 92.4716 | 94.7712 | 89.9313 | 1302 | 106 | 1305 | 72 | 21 | 29.1667 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | het | 92.5169 | 91.7219 | 93.3259 | 87.8250 | 831 | 75 | 839 | 60 | 12 | 20.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 97.0760 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | homalt | 96.3119 | 95.0104 | 97.6496 | 92.1345 | 457 | 24 | 457 | 11 | 8 | 72.7273 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | * | 95.3841 | 97.5624 | 93.3010 | 83.0334 | 20012 | 500 | 19833 | 1424 | 93 | 6.5309 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | het | 93.6309 | 97.7486 | 89.8461 | 85.7790 | 12591 | 290 | 12494 | 1412 | 84 | 5.9490 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | homalt | 98.6236 | 97.4396 | 99.8368 | 73.2710 | 7421 | 195 | 7339 | 12 | 9 | 75.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | * | 96.3250 | 96.2326 | 96.4176 | 78.3427 | 30652 | 1200 | 30655 | 1139 | 529 | 46.4442 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | het | 95.8306 | 96.9701 | 94.7174 | 76.6962 | 19523 | 610 | 19526 | 1089 | 509 | 46.7401 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | homalt | 97.2134 | 94.9739 | 99.5609 | 80.8017 | 11111 | 588 | 11111 | 49 | 20 | 40.8163 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | * | 96.3262 | 95.9877 | 96.6670 | 77.7511 | 19689 | 823 | 19693 | 679 | 349 | 51.3991 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | het | 95.8374 | 96.6850 | 95.0046 | 76.3778 | 12454 | 427 | 12457 | 655 | 335 | 51.1450 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | homalt | 97.1871 | 94.8136 | 99.6825 | 79.8291 | 7221 | 395 | 7222 | 23 | 14 | 60.8696 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | * | 77.2727 | 68.0000 | 89.4737 | 90.9091 | 17 | 8 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 89.0909 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 78.5714 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 95.2941 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 17 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | * | 82.0826 | 74.3902 | 91.5493 | 87.6522 | 61 | 21 | 65 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | het | 83.1533 | 76.0870 | 91.6667 | 83.2168 | 35 | 11 | 44 | 4 | 3 | 75.0000 | |