PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16751-16800 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.6842 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m2_e0 | homalt | 80.6830 | 68.0315 | 99.1149 | 73.2795 | 7959 | 3740 | 7839 | 70 | 70 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 84.5874 | 82.9268 | 86.3158 | 93.7949 | 68 | 14 | 82 | 13 | 6 | 46.1538 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 83.3884 | 80.4348 | 86.5672 | 94.7368 | 37 | 9 | 58 | 9 | 3 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 89.1473 | 24 | 4 | 24 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 76.0546 | 62.4277 | 97.2917 | 93.6809 | 324 | 195 | 467 | 13 | 8 | 61.5385 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 76.2838 | 63.1068 | 96.4158 | 95.2136 | 195 | 114 | 269 | 10 | 6 | 60.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 94.8529 | 5 | 4 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 75.8531 | 61.6915 | 98.4536 | 88.1055 | 124 | 77 | 191 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 58.8648 | 48.0000 | 76.0870 | 94.2284 | 12 | 13 | 35 | 11 | 2 | 18.1818 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 59.2593 | 53.3333 | 66.6667 | 95.4925 | 8 | 7 | 18 | 9 | 2 | 22.2222 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | homalt | 57.3529 | 42.8571 | 86.6667 | 90.0000 | 3 | 4 | 13 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e0 | * | 61.7647 | 63.6364 | 60.0000 | 94.1176 | 7 | 4 | 9 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e0 | het | 69.7674 | 83.3333 | 60.0000 | 94.2857 | 5 | 1 | 6 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 2 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 93.1034 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 94.5755 | 22 | 3 | 22 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.8413 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.3396 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 7 | 0 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | * | 99.0356 | 98.3329 | 99.7484 | 73.8523 | 31321 | 531 | 31321 | 79 | 40 | 50.6329 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | het | 98.6606 | 97.6854 | 99.6554 | 74.6307 | 19667 | 466 | 19667 | 68 | 30 | 44.1176 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.7143 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | homalt | 99.6916 | 99.4786 | 99.9056 | 72.3853 | 11638 | 61 | 11638 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | * | 76.1905 | 72.7273 | 80.0000 | 90.4762 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | * | 98.6486 | 98.4586 | 98.8395 | 90.0500 | 511 | 8 | 511 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | het | 98.3713 | 97.7346 | 99.0164 | 90.2306 | 302 | 7 | 302 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 9 | 0 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.8031 | 200 | 1 | 200 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | * | 97.9592 | 97.5098 | 98.4127 | 88.2536 | 744 | 19 | 744 | 12 | 5 | 41.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5562 | 97.0817 | 98.0354 | 87.9212 | 499 | 15 | 499 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3799 | 6 | 1 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9648 | 98.7603 | 99.1701 | 87.9077 | 239 | 3 | 239 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | * | 95.1278 | 93.9024 | 96.3855 | 91.2262 | 77 | 5 | 80 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | het | 95.9024 | 95.6522 | 96.1538 | 91.6800 | 44 | 2 | 50 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.2308 | 6 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.4286 | 96.4286 | 96.4286 | 89.5911 | 27 | 1 | 27 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | * | 97.1429 | 100.0000 | 94.4444 | 92.9961 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 90.9091 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||