PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
16751-16800 / 86044 show all
qzeng-customSNP*map_l150_m2_e0hetalt
75.0000
60.0000
100.0000
93.6842
1281200
qzeng-customSNP*map_l150_m2_e0homalt
80.6830
68.0315
99.1149
73.2795
7959374078397070
100.0000
qzeng-customINDELD6_15map_l150_m2_e0*
84.5874
82.9268
86.3158
93.7949
681482136
46.1538
qzeng-customINDELD6_15map_l150_m2_e0het
83.3884
80.4348
86.5672
94.7368
3795893
33.3333
qzeng-customINDELD6_15map_l150_m2_e0hetalt
0.0000
87.5000
0.0000
0.0000
71000
qzeng-customINDELD6_15map_l150_m2_e0homalt
85.7143
85.7143
85.7143
89.1473
2442443
75.0000
qzeng-customINDELI1_5map_l150_m2_e0*
76.0546
62.4277
97.2917
93.6809
324195467138
61.5385
qzeng-customINDELI1_5map_l150_m2_e0het
76.2838
63.1068
96.4158
95.2136
195114269106
60.0000
qzeng-customINDELI1_5map_l150_m2_e0hetalt
71.4286
55.5556
100.0000
94.8529
54700
qzeng-customINDELI1_5map_l150_m2_e0homalt
75.8531
61.6915
98.4536
88.1055
1247719132
66.6667
qzeng-customINDELI6_15map_l150_m2_e0*
58.8648
48.0000
76.0870
94.2284
121335112
18.1818
qzeng-customINDELI6_15map_l150_m2_e0het
59.2593
53.3333
66.6667
95.4925
871892
22.2222
qzeng-customINDELI6_15map_l150_m2_e0hetalt
50.0000
33.3333
100.0000
91.6667
12400
qzeng-customINDELI6_15map_l150_m2_e0homalt
57.3529
42.8571
86.6667
90.0000
341320
0.0000
qzeng-customINDELI16_PLUSmap_l150_m2_e0*
61.7647
63.6364
60.0000
94.1176
74960
0.0000
qzeng-customINDELI16_PLUSmap_l150_m2_e0het
69.7674
83.3333
60.0000
94.2857
51640
0.0000
qzeng-customINDELI16_PLUSmap_l150_m2_e0hetalt
0.0000
0.0000
100.0000
95.4545
02100
qzeng-customINDELI16_PLUSmap_l150_m2_e0homalt
57.1429
66.6667
50.0000
93.1034
21220
0.0000
ndellapenna-hhgaINDELI6_15map_l150_m2_e0*
91.6667
88.0000
95.6522
94.5755
2232210
0.0000
ndellapenna-hhgaINDELI6_15map_l150_m2_e0het
85.7143
80.0000
92.3077
94.8413
1231210
0.0000
ndellapenna-hhgaINDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
94.3396
30300
ndellapenna-hhgaINDELI6_15map_l150_m2_e0homalt
100.0000
100.0000
100.0000
94.1176
70700
ndellapenna-hhgaSNP*map_l150_m2_e0*
99.0356
98.3329
99.7484
73.8523
31321531313217940
50.6329
ndellapenna-hhgaSNP*map_l150_m2_e0het
98.6606
97.6854
99.6554
74.6307
19667466196676830
44.1176
ndellapenna-hhgaSNP*map_l150_m2_e0hetalt
88.8889
80.0000
100.0000
85.7143
1641600
ndellapenna-hhgaSNP*map_l150_m2_e0homalt
99.6916
99.4786
99.9056
72.3853
1163861116381110
90.9091
ndellapenna-hhgaINDELI16_PLUSmap_l150_m2_e0*
76.1905
72.7273
80.0000
90.4762
83821
50.0000
ndellapenna-hhgaINDELI16_PLUSmap_l150_m2_e0het
76.9231
83.3333
71.4286
90.1408
51521
50.0000
ndellapenna-hhgaINDELI16_PLUSmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
71.4286
20200
ndellapenna-hhgaINDELI16_PLUSmap_l150_m2_e0homalt
50.0000
33.3333
100.0000
96.2963
12100
ndellapenna-hhgaINDELI1_5map_l150_m2_e0*
98.6486
98.4586
98.8395
90.0500
511851161
16.6667
ndellapenna-hhgaINDELI1_5map_l150_m2_e0het
98.3713
97.7346
99.0164
90.2306
302730230
0.0000
ndellapenna-hhgaINDELI1_5map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
96.5517
90900
ndellapenna-hhgaINDELI1_5map_l150_m2_e0homalt
99.0099
99.5025
98.5222
88.8031
200120031
33.3333
ndellapenna-hhgaINDELC6_15map_l150_m2_e0*
0.0000
100.0000
00000
ndellapenna-hhgaINDELC6_15map_l150_m2_e0het
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELC6_15map_l150_m2_e0hetalt
0.0000
100.0000
00000
ndellapenna-hhgaINDELC6_15map_l150_m2_e0homalt
0.0000
100.0000
00000
ndellapenna-hhgaINDELD1_5map_l150_m2_e0*
97.9592
97.5098
98.4127
88.2536
74419744125
41.6667
ndellapenna-hhgaINDELD1_5map_l150_m2_e0het
97.5562
97.0817
98.0354
87.9212
49915499103
30.0000
ndellapenna-hhgaINDELD1_5map_l150_m2_e0hetalt
92.3077
85.7143
100.0000
97.3799
61600
ndellapenna-hhgaINDELD1_5map_l150_m2_e0homalt
98.9648
98.7603
99.1701
87.9077
239323922
100.0000
ndellapenna-hhgaINDELD6_15map_l150_m2_e0*
95.1278
93.9024
96.3855
91.2262
7758032
66.6667
ndellapenna-hhgaINDELD6_15map_l150_m2_e0het
95.9024
95.6522
96.1538
91.6800
4425021
50.0000
ndellapenna-hhgaINDELD6_15map_l150_m2_e0hetalt
85.7143
75.0000
100.0000
94.2308
62300
ndellapenna-hhgaINDELD6_15map_l150_m2_e0homalt
96.4286
96.4286
96.4286
89.5911
2712711
100.0000
ndellapenna-hhgaINDELD16_PLUSmap_l150_m2_e0*
97.1429
100.0000
94.4444
92.9961
1701710
0.0000
ndellapenna-hhgaINDELD16_PLUSmap_l150_m2_e0het
96.9697
100.0000
94.1176
90.9091
1601610
0.0000
ndellapenna-hhgaINDELD16_PLUSmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
90.0000
10100
ndellapenna-hhgaINDELD16_PLUSmap_l150_m2_e0homalt
0.0000
100.0000
00000