PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16201-16250 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | * | 40.2806 | 25.2386 | 99.7022 | 94.5086 | 8039 | 23813 | 8036 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | het | 43.4711 | 27.8051 | 99.5729 | 95.1282 | 5598 | 14535 | 5595 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | homalt | 34.4676 | 20.8223 | 100.0000 | 92.2232 | 2436 | 9263 | 2436 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 90.5545 | 87.2870 | 94.0762 | 92.0578 | 666 | 97 | 667 | 42 | 5 | 11.9048 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 88.6513 | 85.7977 | 91.7012 | 92.6948 | 441 | 73 | 442 | 40 | 4 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.8102 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.6004 | 90.4959 | 99.0950 | 89.2457 | 219 | 23 | 219 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 89.7493 | 83.4297 | 97.1047 | 92.9146 | 433 | 86 | 436 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 84.1893 | 75.7282 | 94.7791 | 94.2798 | 234 | 75 | 236 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3115 | 9 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.1867 | 94.5274 | 100.0000 | 89.0230 | 190 | 11 | 191 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.8333 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.8504 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4783 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.6879 | 4 | 3 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 94.9446 | 91.4634 | 98.7013 | 94.0310 | 75 | 7 | 76 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 96.7033 | 95.6522 | 97.7778 | 95.1246 | 44 | 2 | 44 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 92.1569 | 7 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 90.9434 | 24 | 4 | 24 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 81.8182 | 81.8182 | 81.8182 | 97.1354 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 96.9565 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 1 | 1 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 3 | 0 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | * | 82.1745 | 84.1415 | 80.2974 | 90.0210 | 642 | 121 | 648 | 159 | 63 | 39.6226 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | het | 81.1800 | 88.1323 | 75.2443 | 90.1933 | 453 | 61 | 462 | 152 | 57 | 37.5000 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 3 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | homalt | 85.5172 | 76.8595 | 96.3731 | 89.4304 | 186 | 56 | 186 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | * | 79.8890 | 78.0488 | 81.8182 | 91.2201 | 64 | 18 | 63 | 14 | 9 | 64.2857 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | het | 79.4212 | 82.6087 | 76.4706 | 92.2844 | 38 | 8 | 39 | 12 | 7 | 58.3333 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 2 | 6 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.8889 | 85.7143 | 92.3077 | 87.9630 | 24 | 4 | 24 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 33.3333 | 33.3333 | 33.3333 | 76.0000 | 1 | 2 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e0 | * | 66.6667 | 52.9412 | 90.0000 | 94.4751 | 9 | 8 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e0 | het | 69.2308 | 56.2500 | 90.0000 | 91.9355 | 9 | 7 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | map_l150_m2_e0 | * | 72.9602 | 74.8580 | 71.1564 | 90.5195 | 1054 | 354 | 1083 | 439 | 234 | 53.3030 | |
| anovak-vg | INDEL | * | map_l150_m2_e0 | het | 71.4142 | 70.7506 | 72.0905 | 91.6109 | 641 | 265 | 669 | 259 | 74 | 28.5714 | |
| anovak-vg | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 38.0952 | 0.0000 | 0.0000 | 8 | 13 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l150_m2_e0 | homalt | 76.2649 | 84.1996 | 69.6970 | 88.0938 | 405 | 76 | 414 | 180 | 160 | 88.8889 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.3958 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.6471 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||