PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15901-15950 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | * | 97.5801 | 96.5949 | 98.5856 | 88.8230 | 1390 | 49 | 1394 | 20 | 4 | 20.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | het | 96.9264 | 95.4545 | 98.4444 | 88.8199 | 882 | 42 | 886 | 14 | 1 | 7.1429 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.5414 | 21 | 2 | 21 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | homalt | 98.8832 | 98.9837 | 98.7830 | 88.0630 | 487 | 5 | 487 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 87.1795 | 94.4444 | 80.9524 | 95.1276 | 17 | 1 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 91.4286 | 100.0000 | 84.2105 | 93.6877 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2963 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.0291 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 89.4737 | 100.0000 | 80.9524 | 95.0237 | 17 | 0 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 91.4286 | 100.0000 | 84.2105 | 93.5811 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.9899 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0117 | 96.8545 | 99.1968 | 86.8347 | 739 | 24 | 741 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5340 | 96.1089 | 99.0020 | 86.1869 | 494 | 20 | 496 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.6923 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 86.5697 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | * | 97.0484 | 98.4500 | 95.6860 | 81.5364 | 11179 | 176 | 11179 | 504 | 90 | 17.8571 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | het | 96.2824 | 98.9244 | 93.7778 | 83.5770 | 7174 | 78 | 7174 | 476 | 75 | 15.7563 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | homalt | 98.6939 | 98.0896 | 99.3057 | 75.8431 | 4005 | 78 | 4005 | 28 | 15 | 53.5714 | |
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | * | 97.6365 | 96.7330 | 98.5570 | 88.7837 | 1362 | 46 | 1366 | 20 | 4 | 20.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | het | 96.9800 | 95.5850 | 98.4163 | 88.7575 | 866 | 40 | 870 | 14 | 1 | 7.1429 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.6427 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | homalt | 98.8577 | 98.9605 | 98.7552 | 88.0545 | 476 | 5 | 476 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | * | 99.3292 | 99.1193 | 99.5400 | 75.2398 | 11255 | 100 | 11253 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | het | 99.1075 | 98.7728 | 99.4445 | 75.8631 | 7163 | 89 | 7161 | 40 | 10 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | homalt | 99.7184 | 99.7306 | 99.7062 | 73.9873 | 4072 | 11 | 4072 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | * | 97.9932 | 98.6506 | 97.3445 | 90.3934 | 1389 | 19 | 1393 | 38 | 6 | 15.7895 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | het | 97.4409 | 98.4547 | 96.4478 | 90.9902 | 892 | 14 | 896 | 33 | 3 | 9.0909 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.6522 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | homalt | 99.0654 | 99.1684 | 98.9627 | 88.3152 | 477 | 4 | 477 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | * | 99.3647 | 99.1322 | 99.5983 | 75.0541 | 20334 | 178 | 20330 | 82 | 23 | 28.0488 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | het | 99.1156 | 98.7579 | 99.4759 | 76.0299 | 12721 | 160 | 12717 | 67 | 17 | 25.3731 | |