PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15701-15750 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.2105 | 88.8889 | 80.0000 | 98.5735 | 16 | 2 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 88.8889 | 100.0000 | 80.0000 | 97.8237 | 16 | 0 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | map_l150_m2_e1 | * | 97.6142 | 98.5067 | 96.7377 | 80.7467 | 31729 | 481 | 31729 | 1070 | 224 | 20.9346 | |
| ghariani-varprowl | SNP | * | map_l150_m2_e1 | het | 96.9234 | 98.7821 | 95.1334 | 83.0282 | 20115 | 248 | 20115 | 1029 | 199 | 19.3392 | |
| ghariani-varprowl | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l150_m2_e1 | homalt | 98.9183 | 98.1990 | 99.6482 | 74.5368 | 11614 | 213 | 11614 | 41 | 25 | 60.9756 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | * | 97.8866 | 98.4558 | 97.3240 | 80.2448 | 20403 | 320 | 20403 | 561 | 134 | 23.8859 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | het | 97.2811 | 98.6938 | 95.9083 | 82.6594 | 12845 | 170 | 12845 | 548 | 124 | 22.6277 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | homalt | 99.0304 | 98.2452 | 99.8283 | 73.7883 | 7558 | 135 | 7558 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | * | 50.0000 | 45.4545 | 55.5556 | 89.8876 | 5 | 6 | 5 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | het | 66.6667 | 83.3333 | 55.5556 | 88.6076 | 5 | 1 | 5 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | * | 90.5545 | 95.5013 | 86.0950 | 91.3170 | 743 | 35 | 743 | 120 | 22 | 18.3333 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | het | 89.3913 | 98.4674 | 81.8471 | 92.4273 | 514 | 8 | 514 | 114 | 21 | 18.4211 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8240 | 92.3387 | 97.4468 | 85.7230 | 229 | 19 | 229 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 81.4371 | 80.0000 | 82.9268 | 93.5433 | 68 | 17 | 68 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | het | 85.9813 | 97.8723 | 76.6667 | 94.5946 | 46 | 1 | 46 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | homalt | 86.2745 | 75.8621 | 100.0000 | 86.2500 | 22 | 7 | 22 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 61.2245 | 55.5556 | 68.1818 | 95.6693 | 15 | 12 | 15 | 7 | 6 | 85.7143 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 66.6667 | 68.7500 | 64.7059 | 96.1625 | 11 | 5 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 92.3077 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | * | 96.3446 | 96.7049 | 95.9869 | 79.3609 | 11123 | 379 | 11122 | 465 | 180 | 38.7097 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | het | 95.8395 | 97.4959 | 94.2384 | 77.2735 | 7164 | 184 | 7164 | 438 | 174 | 39.7260 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | homalt | 97.2966 | 95.3314 | 99.3444 | 82.3553 | 3941 | 193 | 3940 | 26 | 6 | 23.0769 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | * | 45.0221 | 31.7647 | 77.2727 | 96.4912 | 27 | 58 | 17 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | het | 45.0704 | 34.0426 | 66.6667 | 96.1637 | 16 | 31 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | homalt | 55.0000 | 37.9310 | 100.0000 | 94.3089 | 11 | 18 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | map_l150_m2_e1 | * | 80.1656 | 73.0368 | 88.8365 | 94.8724 | 1051 | 388 | 1130 | 142 | 20 | 14.0845 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e1 | het | 79.5622 | 74.4589 | 85.4167 | 95.3345 | 688 | 236 | 738 | 126 | 19 | 15.0794 | |