PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15651-15700 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 96.6667 | 0 | 8 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 98.3607 | 0 | 11 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 95.0000 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 56.0921 | 48.9642 | 65.6489 | 92.3896 | 260 | 271 | 258 | 135 | 114 | 84.4444 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 63.3474 | 64.9842 | 61.7910 | 92.1527 | 206 | 111 | 207 | 128 | 110 | 85.9375 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 10.0000 | 0.0000 | 0.0000 | 1 | 9 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 40.1098 | 25.9804 | 87.9310 | 93.5196 | 53 | 151 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | * | 76.7644 | 71.6136 | 82.7136 | 82.0895 | 8237 | 3265 | 8230 | 1720 | 402 | 23.3721 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | het | 71.5152 | 65.2695 | 79.0828 | 84.9798 | 4796 | 2552 | 4794 | 1268 | 52 | 4.1010 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.9545 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | homalt | 85.5896 | 82.9463 | 88.4069 | 74.3629 | 3429 | 705 | 3424 | 449 | 348 | 77.5056 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 97.0398 | 98.4934 | 95.6284 | 92.9688 | 523 | 8 | 525 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.6989 | 97.7918 | 93.6937 | 94.1905 | 310 | 7 | 312 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.9009 | 203 | 1 | 203 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 89.4737 | 94.4444 | 85.0000 | 97.7925 | 17 | 1 | 17 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 97.4432 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.4220 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-gatk | SNP | * | map_l150_m2_e1 | het | 85.0232 | 75.9171 | 96.6114 | 90.2821 | 15459 | 4904 | 15453 | 542 | 42 | 7.7491 | |
| ckim-gatk | SNP | * | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.8357 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l150_m2_e1 | homalt | 72.6891 | 57.1151 | 99.9408 | 81.5997 | 6755 | 5072 | 6755 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | ti | map_l150_m2_e1 | * | 81.3077 | 69.4784 | 97.9917 | 88.2788 | 14398 | 6325 | 14394 | 295 | 35 | 11.8644 | |
| ckim-gatk | SNP | ti | map_l150_m2_e1 | het | 85.5750 | 76.4656 | 97.1484 | 89.9190 | 9952 | 3063 | 9948 | 292 | 33 | 11.3014 | |
| ckim-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.0233 | 9 | 6 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l150_m2_e1 | homalt | 73.1394 | 57.6758 | 99.9324 | 81.1976 | 4437 | 3256 | 4437 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6987 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.4170 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.7368 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.4043 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 95.0477 | 98.4576 | 91.8660 | 92.3764 | 766 | 12 | 768 | 68 | 6 | 8.8235 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 93.4998 | 98.8506 | 88.6986 | 93.1423 | 516 | 6 | 518 | 66 | 4 | 6.0606 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 98.2332 | 5 | 3 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.6018 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 96.5116 | 97.6471 | 95.4023 | 94.2039 | 83 | 2 | 83 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 95.9184 | 100.0000 | 92.1569 | 95.3888 | 47 | 0 | 47 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.9825 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.0356 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 92.5926 | 92.5926 | 92.5926 | 96.3215 | 25 | 2 | 25 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.5932 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.3158 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l150_m2_e1 | * | 80.8459 | 69.0003 | 97.6016 | 88.7044 | 22225 | 9985 | 22219 | 546 | 44 | 8.0586 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8020 | 95.4802 | 92.1818 | 92.5766 | 507 | 24 | 507 | 43 | 11 | 25.5814 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | het | 93.0931 | 97.7918 | 88.8252 | 94.2352 | 310 | 7 | 310 | 39 | 9 | 23.0769 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | homalt | 97.2840 | 96.5686 | 98.0100 | 85.1661 | 197 | 7 | 197 | 4 | 2 | 50.0000 | |