PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15601-15650 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | map_l150_m2_e1 | * | 96.8601 | 96.7186 | 97.0020 | 78.5397 | 20043 | 680 | 20028 | 619 | 164 | 26.4943 | |
| cchapple-custom | SNP | ti | map_l150_m2_e1 | het | 96.0905 | 96.8652 | 95.3281 | 81.7323 | 12607 | 408 | 12610 | 618 | 163 | 26.3754 | |
| cchapple-custom | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m2_e1 | homalt | 98.1938 | 96.4643 | 99.9865 | 68.8251 | 7421 | 272 | 7418 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | * | 74.1635 | 68.7661 | 80.4805 | 92.8937 | 535 | 243 | 536 | 130 | 62 | 47.6923 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | het | 72.4170 | 65.5172 | 80.9412 | 93.9878 | 342 | 180 | 344 | 81 | 22 | 27.1605 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 12.5000 | 0.0000 | 0.0000 | 1 | 7 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 78.5276 | 77.4194 | 79.6680 | 89.5354 | 192 | 56 | 192 | 49 | 40 | 81.6327 | |
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 10.0000 | 98.2818 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 99.1266 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 12.5000 | 97.7337 | 0 | 0 | 1 | 7 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | map_l150_m2_e1 | * | 96.3274 | 97.0614 | 95.6045 | 79.4325 | 11164 | 338 | 11158 | 513 | 83 | 16.1793 | |
| cchapple-custom | SNP | tv | map_l150_m2_e1 | het | 95.2289 | 97.2237 | 93.3142 | 82.3755 | 7144 | 204 | 7160 | 513 | 83 | 16.1793 | |
| cchapple-custom | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e1 | homalt | 98.3526 | 96.7586 | 100.0000 | 69.7328 | 4000 | 134 | 3998 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l150_m2_e1 | * | 65.3436 | 59.0688 | 73.1100 | 93.1469 | 850 | 589 | 851 | 313 | 195 | 62.3003 | |
| ciseli-custom | INDEL | * | map_l150_m2_e1 | het | 67.0194 | 62.9870 | 71.6034 | 93.6172 | 582 | 342 | 585 | 232 | 136 | 58.6207 | |
| ciseli-custom | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 4.3478 | 0.0000 | 0.0000 | 1 | 22 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l150_m2_e1 | homalt | 63.5484 | 54.2683 | 76.6571 | 91.7065 | 267 | 225 | 266 | 81 | 59 | 72.8395 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 59.2593 | 44.4444 | 88.8889 | 96.0352 | 8 | 10 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 93.5484 | 8 | 8 | 8 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.0291 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | SNP | * | map_l150_m2_e1 | * | 78.3942 | 73.8684 | 83.5109 | 81.5923 | 23793 | 8417 | 23753 | 4690 | 1163 | 24.7974 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | het | 73.3676 | 67.5883 | 80.2276 | 84.7439 | 13763 | 6600 | 13747 | 3388 | 114 | 3.3648 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.9545 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | homalt | 86.5594 | 84.7045 | 88.4973 | 73.1841 | 10018 | 1809 | 9994 | 1299 | 1047 | 80.6005 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | * | 79.2822 | 75.1146 | 83.9394 | 81.3843 | 15566 | 5157 | 15559 | 2977 | 763 | 25.6298 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | het | 74.4004 | 68.8974 | 80.8587 | 84.6760 | 8967 | 4048 | 8964 | 2122 | 62 | 2.9218 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | hetalt | 74.0741 | 66.6667 | 83.3333 | 77.3585 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | homalt | 87.0667 | 85.6493 | 88.5319 | 72.6293 | 6589 | 1104 | 6585 | 853 | 699 | 81.9461 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 54.5455 | 52.9412 | 56.2500 | 93.9440 | 45 | 40 | 45 | 35 | 16 | 45.7143 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 50.5495 | 48.9362 | 52.2727 | 95.2586 | 23 | 24 | 23 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 67.6923 | 75.8621 | 61.1111 | 90.8397 | 22 | 7 | 22 | 14 | 12 | 85.7143 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | * | 96.1137 | 96.3169 | 95.9113 | 91.3208 | 1386 | 53 | 1384 | 59 | 11 | 18.6441 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | het | 95.1102 | 95.7792 | 94.4504 | 92.0262 | 885 | 39 | 885 | 52 | 6 | 11.5385 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | hetalt | 87.8049 | 78.2609 | 100.0000 | 95.4774 | 18 | 5 | 18 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m2_e1 | homalt | 98.3678 | 98.1707 | 98.5656 | 89.0998 | 483 | 9 | 481 | 7 | 5 | 71.4286 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 18.7500 | 11.1111 | 60.0000 | 97.2973 | 3 | 24 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 31.5789 | 18.7500 | 100.0000 | 97.6000 | 3 | 13 | 3 | 0 | 0 | ||