PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15301-15350 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 87.1795 | 94.4444 | 80.9524 | 96.3855 | 17 | 1 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 91.4286 | 100.0000 | 84.2105 | 95.5814 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.1870 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.0430 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.4824 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 3 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 94.9275 | 7 | 1 | 7 | 0 | 0 | ||
| jli-custom | SNP | * | map_l150_m2_e1 | * | 99.1717 | 98.8823 | 99.4628 | 73.1735 | 31850 | 360 | 31847 | 172 | 59 | 34.3023 | |
| jli-custom | SNP | * | map_l150_m2_e1 | het | 98.8617 | 98.5267 | 99.1989 | 74.7124 | 20063 | 300 | 20060 | 162 | 49 | 30.2469 | |
| jli-custom | SNP | * | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | * | map_l150_m2_e1 | homalt | 99.7034 | 99.4927 | 99.9151 | 70.0155 | 11767 | 60 | 11767 | 10 | 10 | 100.0000 | |
| jmaeng-gatk | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | * | 95.8234 | 97.8457 | 93.8830 | 93.2629 | 1408 | 31 | 1412 | 92 | 10 | 10.8696 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | het | 94.5416 | 98.0519 | 91.2738 | 94.1930 | 906 | 18 | 910 | 87 | 6 | 6.8966 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.9831 | 19 | 4 | 19 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.5714 | 98.1707 | 98.9754 | 89.5771 | 483 | 9 | 483 | 5 | 4 | 80.0000 | |
| jli-custom | SNP | ti | map_l150_m2_e1 | * | 99.2158 | 98.9046 | 99.5289 | 73.2251 | 20496 | 227 | 20494 | 97 | 36 | 37.1134 | |
| jli-custom | SNP | ti | map_l150_m2_e1 | het | 98.9202 | 98.5478 | 99.2954 | 74.8618 | 12826 | 189 | 12824 | 91 | 30 | 32.9670 | |
| jli-custom | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.9412 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l150_m2_e1 | homalt | 99.7134 | 99.5060 | 99.9217 | 69.9097 | 7655 | 38 | 7655 | 6 | 6 | 100.0000 | |
| jli-custom | SNP | tv | map_l150_m2_e1 | * | 99.0935 | 98.8437 | 99.3446 | 73.0880 | 11369 | 133 | 11368 | 75 | 23 | 30.6667 | |
| jli-custom | SNP | tv | map_l150_m2_e1 | het | 98.7581 | 98.4894 | 99.0283 | 74.4439 | 7237 | 111 | 7236 | 71 | 19 | 26.7606 | |
| jli-custom | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l150_m2_e1 | homalt | 99.6848 | 99.4678 | 99.9028 | 70.2106 | 4112 | 22 | 4112 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | * | 99.3954 | 99.3479 | 99.4429 | 75.5927 | 11427 | 75 | 11425 | 64 | 9 | 14.0625 | |