PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15201-15250 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 97.3973 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.8401 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.3750 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | * | 97.9875 | 97.9847 | 97.9903 | 91.3313 | 1410 | 29 | 1414 | 29 | 7 | 24.1379 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | het | 97.7901 | 97.9437 | 97.6369 | 91.8626 | 905 | 19 | 909 | 22 | 3 | 13.6364 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3846 | 21 | 2 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.4741 | 98.3740 | 98.5743 | 89.6632 | 484 | 8 | 484 | 7 | 4 | 57.1429 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | * | 66.9029 | 50.5622 | 98.8488 | 91.2579 | 10478 | 10245 | 10476 | 122 | 3 | 2.4590 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | het | 78.3815 | 65.0480 | 98.5906 | 91.4083 | 8466 | 4549 | 8464 | 121 | 2 | 1.6529 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 96.7742 | 4 | 11 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | homalt | 41.3935 | 26.1017 | 99.9502 | 90.5160 | 2008 | 5685 | 2008 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | * | 66.1510 | 49.8261 | 98.3860 | 92.1390 | 5731 | 5771 | 5730 | 94 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | het | 77.9198 | 64.6434 | 98.0591 | 92.2018 | 4750 | 2598 | 4749 | 94 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | homalt | 38.2313 | 23.6333 | 100.0000 | 91.7042 | 977 | 3157 | 977 | 0 | 0 | ||
| dgrover-gatk | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | * | 99.3012 | 98.8437 | 99.7631 | 74.2719 | 11369 | 133 | 11369 | 27 | 12 | 44.4444 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | het | 99.0483 | 98.4349 | 99.6693 | 74.6001 | 7233 | 115 | 7233 | 24 | 9 | 37.5000 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | homalt | 99.7698 | 99.6130 | 99.9272 | 73.5901 | 4118 | 16 | 4118 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 89.2308 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.4545 | 1 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | * | map_l150_m2_e1 | * | 99.3609 | 98.9413 | 99.7840 | 74.9205 | 31869 | 341 | 31869 | 69 | 32 | 46.3768 | |
| egarrison-hhga | SNP | * | map_l150_m2_e1 | het | 99.1207 | 98.5415 | 99.7068 | 75.7393 | 20066 | 297 | 20066 | 59 | 22 | 37.2881 | |
| egarrison-hhga | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e1 | homalt | 99.7799 | 99.6449 | 99.9152 | 73.3597 | 11785 | 42 | 11785 | 10 | 10 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l150_m2_e1 | * | 99.3895 | 98.9866 | 99.7957 | 75.2728 | 20513 | 210 | 20513 | 42 | 20 | 47.6190 | |
| egarrison-hhga | SNP | ti | map_l150_m2_e1 | het | 99.1616 | 98.6016 | 99.7280 | 76.3347 | 12833 | 182 | 12833 | 35 | 13 | 37.1429 | |
| egarrison-hhga | SNP | ti | map_l150_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 83.9506 | 13 | 2 | 13 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l150_m2_e1 | homalt | 99.7853 | 99.6620 | 99.9088 | 73.2343 | 7667 | 26 | 7667 | 7 | 7 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4008 | 98.4934 | 98.3083 | 90.5304 | 523 | 8 | 523 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | het | 98.2622 | 98.1073 | 98.4177 | 90.7331 | 311 | 6 | 311 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0938 | 10 | 0 | 10 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5366 | 99.0196 | 98.0583 | 89.4467 | 202 | 2 | 202 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | * | 92.0000 | 85.1852 | 100.0000 | 94.2643 | 23 | 4 | 23 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | het | 85.7143 | 75.0000 | 100.0000 | 94.7137 | 12 | 4 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 8 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l150_m2_e1 | * | 96.5509 | 96.1084 | 96.9975 | 95.6629 | 1383 | 56 | 1906 | 59 | 42 | 71.1864 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e1 | het | 96.7897 | 96.5368 | 97.0439 | 88.2865 | 892 | 32 | 1149 | 35 | 18 | 51.4286 | |