PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15101-15150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.2126 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.6647 | 0 | 0 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | * | 97.7120 | 97.3635 | 98.0630 | 88.1407 | 517 | 14 | 810 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | het | 97.0790 | 96.5300 | 97.6344 | 87.6527 | 306 | 11 | 454 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.9850 | 8 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0279 | 99.5098 | 98.5507 | 88.2373 | 203 | 1 | 340 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | * | 78.9185 | 70.3704 | 89.8305 | 86.2471 | 19 | 8 | 53 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | het | 71.6724 | 62.5000 | 84.0000 | 88.4259 | 10 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 76.7442 | 2 | 1 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | homalt | 89.5349 | 87.5000 | 91.6667 | 85.8824 | 7 | 1 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | * | 97.7557 | 97.9434 | 97.5687 | 88.8732 | 762 | 16 | 923 | 23 | 13 | 56.5217 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | het | 98.0041 | 98.4674 | 97.5450 | 87.6065 | 514 | 8 | 596 | 15 | 5 | 33.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 96.7552 | 5 | 3 | 11 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.7568 | 97.9839 | 97.5309 | 89.9783 | 243 | 5 | 316 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 99.1525 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | * | 82.6772 | 77.7778 | 88.2353 | 90.7104 | 14 | 4 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 85.7143 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 98.5075 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 79.4118 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 77.7778 | 2 | 4 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 92.3077 | 88.8889 | 96.0000 | 95.6897 | 24 | 3 | 24 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 95.7386 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.1749 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2053 | 98.3290 | 98.0818 | 90.2929 | 765 | 13 | 767 | 15 | 4 | 26.6667 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 98.0028 | 98.4674 | 97.5425 | 90.6603 | 514 | 8 | 516 | 13 | 2 | 15.3846 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.3282 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7854 | 98.3871 | 99.1870 | 88.4507 | 244 | 4 | 244 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e1 | * | 99.2396 | 99.1990 | 99.2803 | 78.3146 | 20557 | 166 | 20553 | 149 | 36 | 24.1611 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e1 | het | 99.0483 | 99.1779 | 98.9191 | 81.1057 | 12908 | 107 | 12904 | 141 | 30 | 21.2766 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5763 | 15 | 0 | 15 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.5631 | 99.2331 | 99.8953 | 71.0135 | 7634 | 59 | 7634 | 8 | 6 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | * | 99.0574 | 99.1393 | 98.9756 | 78.7166 | 11403 | 99 | 11401 | 118 | 24 | 20.3390 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | het | 98.8473 | 99.2107 | 98.4865 | 81.3098 | 7290 | 58 | 7288 | 112 | 20 | 17.8571 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4930 | 98.3051 | 98.6817 | 90.9679 | 522 | 9 | 524 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 98.0992 | 97.4763 | 98.7302 | 91.7883 | 309 | 8 | 311 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6140 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.6501 | 203 | 1 | 203 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 97.6190 | 96.4706 | 98.7952 | 93.1120 | 82 | 3 | 82 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 98.9474 | 100.0000 | 97.9167 | 94.2238 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.2330 | 8 | 1 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.4286 | 93.1034 | 100.0000 | 90.0369 | 27 | 2 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 97.1698 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.8182 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |