PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15051-15100 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | * | 98.1350 | 98.0720 | 98.1982 | 88.9000 | 763 | 15 | 763 | 14 | 4 | 28.5714 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | het | 97.7011 | 97.7011 | 97.7011 | 88.5827 | 510 | 12 | 510 | 12 | 2 | 16.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6245 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.7266 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | ti | map_l150_m2_e1 | * | 72.1848 | 56.5603 | 99.7362 | 77.6680 | 11721 | 9002 | 11721 | 31 | 7 | 22.5806 | |
| ckim-isaac | SNP | ti | map_l150_m2_e1 | het | 75.7313 | 61.0680 | 99.6614 | 80.0450 | 7948 | 5067 | 7948 | 27 | 3 | 11.1111 | |
| ckim-isaac | SNP | ti | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 6 | 9 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l150_m2_e1 | homalt | 65.7188 | 48.9666 | 99.8939 | 70.0833 | 3767 | 3926 | 3767 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 11 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | * | 96.1308 | 95.7609 | 96.5035 | 93.5147 | 1378 | 61 | 1380 | 50 | 7 | 14.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | het | 94.7936 | 94.4805 | 95.1087 | 94.5035 | 873 | 51 | 875 | 45 | 4 | 8.8889 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.8515 | 19 | 4 | 19 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | homalt | 98.8810 | 98.7805 | 98.9817 | 89.8846 | 486 | 6 | 486 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | map_l150_m2_e1 | * | 70.6272 | 54.6818 | 99.7000 | 78.0346 | 17613 | 14597 | 17614 | 53 | 14 | 26.4151 | |
| ckim-isaac | SNP | * | map_l150_m2_e1 | het | 74.2817 | 59.2251 | 99.6036 | 80.2344 | 12060 | 8303 | 12061 | 48 | 9 | 18.7500 | |
| ckim-isaac | SNP | * | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.3016 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e1 | homalt | 63.8200 | 46.8842 | 99.9099 | 70.9059 | 5545 | 6282 | 5545 | 5 | 5 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | * | 78.2708 | 64.7834 | 98.8506 | 91.4496 | 344 | 187 | 344 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | het | 82.5046 | 70.6625 | 99.1150 | 92.6095 | 224 | 93 | 224 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.0617 | 8 | 2 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | homalt | 70.4403 | 54.9020 | 98.2456 | 86.5882 | 112 | 92 | 112 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | * | 41.1765 | 25.9259 | 100.0000 | 97.8723 | 7 | 20 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | het | 40.0000 | 25.0000 | 100.0000 | 98.7395 | 4 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.1818 | 2 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 97.8723 | 1 | 7 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m2_e1 | * | 67.7075 | 51.2780 | 99.6284 | 78.7389 | 5898 | 5604 | 5899 | 22 | 7 | 31.8182 | |
| ckim-isaac | SNP | tv | map_l150_m2_e1 | het | 71.6314 | 55.9608 | 99.4920 | 80.5897 | 4112 | 3236 | 4113 | 21 | 6 | 28.5714 | |
| ckim-isaac | SNP | tv | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.3016 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m2_e1 | homalt | 60.1387 | 43.0092 | 99.9438 | 72.5081 | 1778 | 2356 | 1778 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | * | 88.0187 | 87.0588 | 89.0000 | 89.9598 | 74 | 11 | 89 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | het | 95.1593 | 97.8723 | 92.5926 | 89.1129 | 46 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 61.5385 | 44.4444 | 100.0000 | 89.6552 | 4 | 5 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | homalt | 81.9113 | 82.7586 | 81.0811 | 91.0412 | 24 | 5 | 30 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 93.1034 | 97.1202 | 0 | 0 | 27 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 84.6154 | 97.5655 | 0 | 0 | 11 | 2 | 0 | 0.0000 | |